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    shroom3 shroom family member 3 [ Echeneis naucrates (live sharksucker) ]

    Gene ID: 115052490, updated on 17-Mar-2024

    Summary

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    Gene symbol
    shroom3
    Gene description
    shroom family member 3
    See related
    Ensembl:ENSENLG00000003225
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Echeneis naucrates
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
    Orthologs
    human zebrafish all
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    Genomic context

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    See shroom3 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current fEcheNa1.1 (GCF_900963305.1) 12 NC_042522.1 (671695..702955, complement)

    Chromosome 12 - NC_042522.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 10 Neighboring gene uncharacterized LOC115052091 Neighboring gene myb-like protein X Neighboring gene teratocarcinoma-derived growth factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042522.1 Chromosome 12 Reference fEcheNa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in apical junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Shroom3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEcheNa1.1 Primary Assembly

    Genomic

    1. NC_042522.1 Reference fEcheNa1.1 Primary Assembly

      Range
      671695..702955 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029516648.1 → XP_029372508.1  protein Shroom3-like isoform X3

    2. XM_029516647.1 → XP_029372507.1  protein Shroom3-like isoform X2

    3. XM_029516646.1 → XP_029372506.1  protein Shroom3-like isoform X1

      UniProtKB/TrEMBL
      A0A665TAA2
      Related
      ENSENLP00000006779.1, ENSENLT00000007078.1
      Conserved Domains (2) summary
      pfam08687
      Location:1549 → 1812
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:792 → 994
      ASD1; Apx/Shroom domain ASD1
    Nucleotide Protein
    Heading Accession and Version

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