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    si:ch73-138n13.1 calponin homology domain-containing protein DDB_G0272472-like [ Echeneis naucrates (live sharksucker) ]

    Gene ID: 115049455, updated on 17-Mar-2024

    Summary

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    Gene symbol
    si:ch73-138n13.1
    Gene description
    calponin homology domain-containing protein DDB_G0272472-like
    See related
    Ensembl:ENSENLG00000001447
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Echeneis naucrates
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
    Orthologs
    zebrafish all
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    Genomic context

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    See si:ch73-138n13.1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current fEcheNa1.1 (GCF_900963305.1) 9 NC_042519.1 (5763248..5788073, complement)

    Chromosome 9 - NC_042519.1Genomic Context describing neighboring genes Neighboring gene crystallin, beta B2 Neighboring gene beta-crystallin B3-like Neighboring gene ring finger protein 10 Neighboring gene POP5 homolog, ribonuclease P/MRP subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042519.1 Chromosome 9 Reference fEcheNa1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    calponin homology domain-containing protein DDB_G0272472-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEcheNa1.1 Primary Assembly

    Genomic

    1. NC_042519.1 Reference fEcheNa1.1 Primary Assembly

      Range
      5763248..5788073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029511700.1 → XP_029367560.1  calponin homology domain-containing protein DDB_G0272472-like isoform X1

      Conserved Domains (4) summary
      PHA03247
      Location:45 → 506
      PHA03247; large tegument protein UL36; Provisional
      pfam08580
      Location:24 → 213
      KAR9; Yeast cortical protein KAR9
      pfam15327
      Location:1498 → 1670
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
      pfam17380
      Location:833 → 1151
      DUF5401; Family of unknown function (DUF5401)

    2. XM_029511699.1 → XP_029367559.1  calponin homology domain-containing protein DDB_G0272472-like isoform X1

      Conserved Domains (4) summary
      PHA03247
      Location:45 → 506
      PHA03247; large tegument protein UL36; Provisional
      pfam08580
      Location:24 → 213
      KAR9; Yeast cortical protein KAR9
      pfam15327
      Location:1498 → 1670
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
      pfam17380
      Location:833 → 1151
      DUF5401; Family of unknown function (DUF5401)

    3. XM_029511701.1 → XP_029367561.1  calponin homology domain-containing protein DDB_G0272472-like isoform X2

      UniProtKB/TrEMBL
      A0A665T847
      Related
      ENSENLP00000002913.1, ENSENLT00000003095.1
      Conserved Domains (5) summary
      PHA03247
      Location:45 → 506
      PHA03247; large tegument protein UL36; Provisional
      PHA03307
      Location:1320 → 1653
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam08580
      Location:24 → 213
      KAR9; Yeast cortical protein KAR9
      pfam15327
      Location:1498 → 1663
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
      pfam17380
      Location:833 → 1151
      DUF5401; Family of unknown function (DUF5401)

    4. XM_029511698.1 → XP_029367558.1  calponin homology domain-containing protein DDB_G0272472-like isoform X1

      Conserved Domains (4) summary
      PHA03247
      Location:45 → 506
      PHA03247; large tegument protein UL36; Provisional
      pfam08580
      Location:24 → 213
      KAR9; Yeast cortical protein KAR9
      pfam15327
      Location:1498 → 1670
      Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
      pfam17380
      Location:833 → 1151
      DUF5401; Family of unknown function (DUF5401)
    Nucleotide Protein
    Heading Accession and Version

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