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    ATG16L1 autophagy related 16 like 1 [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115099664, updated on 17-Mar-2024

    Summary

    Gene symbol
    ATG16L1
    Gene description
    autophagy related 16 like 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
    Orthologs
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    Genomic context

    See ATG16L1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 9 NC_042623.1 (163111569..163366462, complement)

    Chromosome 9 - NC_042623.1Genomic Context describing neighboring genes Neighboring gene S-antigen visual arrestin Neighboring gene uncharacterized LOC115099665 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene 5S ribosomal RNA Neighboring gene neuraminidase 2

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_042623.1 Chromosome 9 Reference aRhiBiv1.1 Primary Assembly

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in negative stranded viral RNA replication IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    autophagy-related protein 16-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042623.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      163111569..163366462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029617424.1XP_029473284.1  autophagy-related protein 16-1 isoform X7

    2. XM_029617422.1XP_029473282.1  autophagy-related protein 16-1 isoform X5

      Conserved Domains (3) summary
      cd00200
      Location:317609
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:325363
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    3. XM_029617421.1XP_029473281.1  autophagy-related protein 16-1 isoform X4

    4. XM_029617423.1XP_029473283.1  autophagy-related protein 16-1 isoform X6

    5. XM_029617426.1XP_029473286.1  autophagy-related protein 16-1 isoform X8

      Conserved Domains (3) summary
      cd00200
      Location:259551
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:267305
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:2131
      ATG16; Autophagy protein 16 (ATG16)
    6. XM_029617425.1XP_029473285.1  autophagy-related protein 16-1 isoform X8

      Conserved Domains (3) summary
      cd00200
      Location:259551
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:267305
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:2131
      ATG16; Autophagy protein 16 (ATG16)
    7. XM_029617420.1XP_029473280.1  autophagy-related protein 16-1 isoform X3

    8. XM_029617419.1XP_029473279.1  autophagy-related protein 16-1 isoform X2

    9. XM_029617418.1XP_029473278.1  autophagy-related protein 16-1 isoform X1