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    LOC101076540 retinoic acid receptor beta-like [ Takifugu rubripes (torafugu) ]

    Gene ID: 101076540, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101076540
    Gene description
    retinoic acid receptor beta-like
    See related
    Ensembl:ENSTRUG00000027704
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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    Genomic context

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    See LOC101076540 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 12 NC_042296.1 (8095190..8162340)
    101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004071315.1 (4869..18857, complement)

    Chromosome 12 - NC_042296.1Genomic Context describing neighboring genes Neighboring gene zinc transporter Slc39a7-like Neighboring gene C3a anaphylatoxin chemotactic receptor-like Neighboring gene uncharacterized LOC115251655 Neighboring gene DNA topoisomerase 2-beta-like Neighboring gene peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor beta-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042296.1 Reference fTakRub1.2 Primary Assembly

      Range
      8095190..8162340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029844583.1 → XP_029700443.1  retinoic acid receptor beta-like isoform X1

      UniProtKB/TrEMBL
      A0A674MNQ2

    2. XM_029844584.1 → XP_029700444.1  retinoic acid receptor beta-like isoform X2

      UniProtKB/TrEMBL
      A0A674MNQ2, A0A674MSD4
      Related
      ENSTRUP00000063929.1, ENSTRUT00000069702.1
      Conserved Domains (2) summary
      cd06937
      Location:179 → 409
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:75 → 159
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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