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    LOC101069404 membrane-associated phosphatidylinositol transfer protein 2-like [ Takifugu rubripes (torafugu) ]

    Gene ID: 101069404, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101069404
    Gene description
    membrane-associated phosphatidylinositol transfer protein 2-like
    See related
    Ensembl:ENSTRUG00000009641
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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    Genomic context

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    See LOC101069404 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 21 NC_042305.1 (13098827..13128281)
    101 previous assembly FUGU5 (GCF_000180615.1) 21 NC_018910.1 (8949281..8979278)

    Chromosome 21 - NC_042305.1Genomic Context describing neighboring genes Neighboring gene Rab interacting lysosomal protein-like 2 Neighboring gene lysine methyltransferase 5Ab Neighboring gene mitochondrial translation release factor in rescue Neighboring gene ADP-ribosylation factor-like 6 interacting protein 4 Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylcholine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylcholine transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    membrane-associated phosphatidylinositol transfer protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042305.1 Reference fTakRub1.2 Primary Assembly

      Range
      13098827..13128281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029829345.1 → XP_029685205.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A674N131

    2. XM_029829344.1 → XP_029685204.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A674N131

    3. XM_029829348.1 → XP_029685208.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X5

      UniProtKB/TrEMBL
      A0A674NU44
      Related
      ENSTRUP00000076780.1, ENSTRUT00000069607.1

    4. XM_029829346.1 → XP_029685206.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X2

      UniProtKB/TrEMBL
      A0A674N131

    5. XM_029829349.1 → XP_029685209.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X7

      UniProtKB/TrEMBL
      A0A674ND56

    6. XM_011615682.2 → XP_011613984.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X3

      See identical proteins and their annotated locations for XP_011613984.1

      UniProtKB/TrEMBL
      H2THR2
      Conserved Domains (4) summary
      cd08889
      Location:1 → 260
      SRPBCC_PITPNM1-2_like; Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs)
      smart00775
      Location:1136 → 1266
      LNS2; This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins
      COG5083
      Location:997 → 1258
      SMP2; Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid maintenance [Lipid transport and metabolism]
      pfam02862
      Location:703 → 990
      DDHD; DDHD domain

    7. XM_011615684.2 → XP_011613986.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X6

      UniProtKB/TrEMBL
      A0A674ND56
      Related
      ENSTRUP00000024212.3, ENSTRUT00000024311.3
      Conserved Domains (4) summary
      cd08889
      Location:1 → 260
      SRPBCC_PITPNM1-2_like; Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs)
      smart00775
      Location:1039 → 1169
      LNS2; This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins
      COG5083
      Location:900 → 1161
      SMP2; Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid maintenance [Lipid transport and metabolism]
      pfam02862
      Location:703 → 893
      DDHD; DDHD domain

    8. XM_029829347.1 → XP_029685207.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X4

      UniProtKB/TrEMBL
      H2THR2

    9. XM_029829350.1 → XP_029685210.1  membrane-associated phosphatidylinositol transfer protein 2-like isoform X8

      UniProtKB/TrEMBL
      A0A674ND56
    Nucleotide Protein
    Heading Accession and Version

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