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    NOVA1 NOVA alternative splicing regulator 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 533792, updated on 4-Oct-2024

    Summary

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    Official Symbol
    NOVA1provided by VGNC
    Official Full Name
    NOVA alternative splicing regulator 1provided by VGNC
    Primary source
    VGNC:VGNC:84869
    See related
    BGD:BT17805; Ensembl:ENSBTAG00000002170
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NOVA1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (36712104..36879142, complement)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112443154 Neighboring gene uncharacterized LOC132343365 Neighboring gene small ribosomal subunit protein uS5-like Neighboring gene U6 spliceosomal RNA Neighboring gene peptidyl-prolyl cis-trans isomerase A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Nova-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101150.2 → NP_001094620.2  RNA-binding protein Nova-1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000021
      UniProtKB/TrEMBL
      A0AAA9RUX3
      Related
      ENSBTAP00000076015.1, ENSBTAT00000124918.1
      Conserved Domains (3) summary
      cd09031
      Location:422 → 492
      KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
      cd22435
      Location:49 → 121
      KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
      cd22436
      Location:172 → 241
      KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      36712104..36879142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059879106.1 → XP_059735089.1  RNA-binding protein Nova-1 isoform X1

      UniProtKB/TrEMBL
      F1MBI6, G3N2N4
      Related
      ENSBTAP00000031193.6, ENSBTAT00000031237.6

    2. XM_059879108.1 → XP_059735091.1  RNA-binding protein Nova-1 isoform X3

    3. XM_059879107.1 → XP_059735090.1  RNA-binding protein Nova-1 isoform X2

    4. XM_059879112.1 → XP_059735095.1  RNA-binding protein Nova-1 isoform X4

    5. XM_059879111.1 → XP_059735094.1  RNA-binding protein Nova-1 isoform X4

    6. XM_059879113.1 → XP_059735096.1  RNA-binding protein Nova-1 isoform X4

    7. XM_059879110.1 → XP_059735093.1  RNA-binding protein Nova-1 isoform X4

    8. XM_059879115.1 → XP_059735098.1  RNA-binding protein Nova-1 isoform X4

    9. XM_059879109.1 → XP_059735092.1  RNA-binding protein Nova-1 isoform X4

    10. XM_059879114.1 → XP_059735097.1  RNA-binding protein Nova-1 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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