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    rnf34b ring finger protein 34b [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

    Gene ID: 115430866, updated on 17-Mar-2024

    Summary

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    Gene symbol
    rnf34b
    Gene description
    ring finger protein 34b
    See related
    Ensembl:ENSSORG00005016366
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sphaeramia orbicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
    Orthologs
    zebrafish all
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    Genomic context

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    See rnf34b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current fSphaOr1.1 (GCF_902148855.1) 12 NC_043968.1 (72147306..72185741, complement)

    Chromosome 12 - NC_043968.1Genomic Context describing neighboring genes Neighboring gene ORAI calcium release-activated calcium modulator 1b Neighboring gene lysine (K)-specific demethylase 2Bb Neighboring gene glutathione hydrolase 1 proenzyme-like Neighboring gene glutathione hydrolase 5 proenzyme-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043968.1 Chromosome 12 Reference fSphaOr1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF34-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSphaOr1.1

    Genomic

    1. NC_043968.1 Reference fSphaOr1.1

      Range
      72147306..72185741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030151138.1 → XP_030006998.1  E3 ubiquitin-protein ligase RNF34-like isoform X4

      UniProtKB/TrEMBL
      A0A673AY49, A0A673AYJ8
      Related
      ENSSORP00005034726.1, ENSSORT00005035649.1
      Conserved Domains (2) summary
      cd16706
      Location:355 → 393
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily

    2. XM_030151135.1 → XP_030006995.1  E3 ubiquitin-protein ligase RNF34-like isoform X2

      UniProtKB/TrEMBL
      A0A673AYJ8
      Conserved Domains (2) summary
      cd16706
      Location:369 → 407
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily

    3. XM_030151137.1 → XP_030006997.1  E3 ubiquitin-protein ligase RNF34-like isoform X3

      UniProtKB/TrEMBL
      A0A673AYJ8
      Conserved Domains (2) summary
      cd16706
      Location:360 → 398
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily

    4. XM_030151134.1 → XP_030006994.1  E3 ubiquitin-protein ligase RNF34-like isoform X1

      UniProtKB/TrEMBL
      A0A673AYJ8
      Conserved Domains (2) summary
      cd16706
      Location:374 → 412
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily
    Nucleotide Protein
    Heading Accession and Version

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