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    tfec transcription factor EC [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

    Gene ID: 115430869, updated on 12-Sep-2024

    Summary

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    Gene symbol
    tfec
    Gene description
    transcription factor EC
    See related
    Ensembl:ENSSORG00005020186
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sphaeramia orbicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
    Orthologs
    zebrafish all
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    Genomic context

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    See tfec in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current fSphaOr1.1 (GCF_902148855.1) 12 NC_043968.1 (31162167..31209810, complement)

    Chromosome 12 - NC_043968.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115429924 Neighboring gene forkhead box P2 Neighboring gene MyoD family inhibitor domain containing Neighboring gene aldo-keto reductase family 1 member B1-like Neighboring gene aldo-keto reductase family 1 member B1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043968.1 Chromosome 12 Reference fSphaOr1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor EC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSphaOr1.1

    Genomic

    1. NC_043968.1 Reference fSphaOr1.1

      Range
      31162167..31209810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030151144.1 → XP_030007004.1  transcription factor EC isoform X4

      Conserved Domains (3) summary
      pfam11851
      Location:296 → 442
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:40 → 158
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:207 → 291
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    2. XM_030151148.1 → XP_030007008.1  transcription factor EC isoform X7

      UniProtKB/TrEMBL
      A0A673BT02
      Conserved Domains (3) summary
      pfam11851
      Location:270 → 416
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:40 → 158
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:181 → 265
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    3. XM_030151141.1 → XP_030007001.1  transcription factor EC isoform X1

      UniProtKB/TrEMBL
      A0A673BT02
      Conserved Domains (3) summary
      pfam11851
      Location:330 → 476
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:40 → 165
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:241 → 325
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    4. XM_030151142.1 → XP_030007002.1  transcription factor EC isoform X2

      UniProtKB/TrEMBL
      A0A673BT02
      Conserved Domains (3) summary
      pfam11851
      Location:325 → 471
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:67 → 160
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:236 → 320
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    5. XM_030151143.1 → XP_030007003.1  transcription factor EC isoform X3

      UniProtKB/TrEMBL
      A0A673BT02
      Conserved Domains (3) summary
      pfam11851
      Location:304 → 450
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:40 → 165
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:215 → 299
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    6. XM_030151147.1 → XP_030007007.1  transcription factor EC isoform X6

      UniProtKB/TrEMBL
      A0A673BT02
      Related
      ENSSORP00005043717.1, ENSSORT00005044828.1
      Conserved Domains (3) summary
      pfam11851
      Location:277 → 423
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:18 → 112
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:188 → 272
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    7. XM_030151146.1 → XP_030007006.1  transcription factor EC isoform X5

      UniProtKB/TrEMBL
      A0A673BT02
      Conserved Domains (3) summary
      pfam11851
      Location:278 → 424
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:21 → 113
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:189 → 273
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins

    8. XM_030151149.1 → XP_030007009.1  transcription factor EC isoform X8

      UniProtKB/TrEMBL
      A0A673BT02, A0A673BU61
      Related
      ENSSORP00005043718.1, ENSSORT00005044829.1
      Conserved Domains (3) summary
      pfam11851
      Location:252 → 398
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:21 → 113
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cd18925
      Location:163 → 247
      bHLHzip_TFEC; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in transcription factor EC (TFEC) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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