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    trpm7 transient receptor potential cation channel, subfamily M, member 7 [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

    Gene ID: 115439651, updated on 17-Mar-2024

    Summary

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    Gene symbol
    trpm7
    Gene description
    transient receptor potential cation channel, subfamily M, member 7
    See related
    Ensembl:ENSSORG00005001946
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sphaeramia orbicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
    Orthologs
    human zebrafish all
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    Genomic context

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    See trpm7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    100 current fSphaOr1.1 (GCF_902148855.1) 3 NC_043959.1 (39797764..39852319, complement)

    Chromosome 3 - NC_043959.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115415978 Neighboring gene BCL2 like 10 Neighboring gene uncharacterized LOC115415379 Neighboring gene gonadotropin-releasing hormone II receptor-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043959.1 Chromosome 3 Reference fSphaOr1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic cation homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic cation transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein tetramerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transient receptor potential cation channel subfamily M member 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSphaOr1.1

    Genomic

    1. NC_043959.1 Reference fSphaOr1.1

      Range
      39797764..39852319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030163529.1 → XP_030019389.1  transient receptor potential cation channel subfamily M member 7 isoform X2

      UniProtKB/TrEMBL
      A0A673AXP1, A0A673AZ65
      Related
      ENSSORP00005034414.1, ENSSORT00005035333.1
      Conserved Domains (4) summary
      TIGR00870
      Location:661 → 1194
      trp; transient-receptor-potential calcium channel protein
      cd16971
      Location:1622 → 1860
      Alpha_kinase_ChaK1_TRMP7; Alpha-kinase domain of channel kinase 1, also called transient receptor potential cation channel subfamily M member 7
      pfam16519
      Location:1185 → 1240
      TRPM_tetra; Tetramerisation domain of TRPM
      pfam18139
      Location:107 → 372
      LSDAT_euk; SLOG in TRPM

    2. XM_030163520.1 → XP_030019380.1  transient receptor potential cation channel subfamily M member 7 isoform X1

      UniProtKB/TrEMBL
      A0A673AXP1
      Related
      ENSSORP00005034875.1, ENSSORT00005035799.1
      Conserved Domains (4) summary
      TIGR00870
      Location:677 → 1210
      trp; transient-receptor-potential calcium channel protein
      cd16971
      Location:1638 → 1876
      Alpha_kinase_ChaK1_TRMP7; Alpha-kinase domain of channel kinase 1, also called transient receptor potential cation channel subfamily M member 7
      pfam16519
      Location:1201 → 1256
      TRPM_tetra; Tetramerisation domain of TRPM
      pfam18139
      Location:123 → 388
      LSDAT_euk; SLOG in TRPM

    3. XM_030163538.1 → XP_030019398.1  transient receptor potential cation channel subfamily M member 7 isoform X3

      Conserved Domains (3) summary
      TIGR00870
      Location:677 → 1023
      trp; transient-receptor-potential calcium channel protein
      pfam00520
      Location:877 → 1063
      Ion_trans; Ion transport protein
      pfam18139
      Location:123 → 388
      LSDAT_euk; SLOG in TRPM

    4. XM_030163553.1 → XP_030019413.1  transient receptor potential cation channel subfamily M member 7 isoform X5

      Conserved Domains (1) summary
      pfam18139
      Location:123 → 388
      LSDAT_euk; SLOG in TRPM

    5. XM_030163544.1 → XP_030019404.1  transient receptor potential cation channel subfamily M member 7 isoform X4

      Conserved Domains (1) summary
      pfam18139
      Location:123 → 388
      LSDAT_euk; SLOG in TRPM

    6. XM_030163561.1 → XP_030019421.1  transient receptor potential cation channel subfamily M member 7 isoform X6

      Conserved Domains (1) summary
      pfam18139
      Location:123 → 388
      LSDAT_euk; SLOG in TRPM
    Nucleotide Protein
    Heading Accession and Version

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