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    ankdd1b ankyrin repeat and death domain containing 1B [ Sparus aurata (gilthead seabream) ]

    Gene ID: 115582478, updated on 17-Mar-2024

    Summary

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    Gene symbol
    ankdd1b
    Gene description
    ankyrin repeat and death domain containing 1B
    See related
    Ensembl:ENSSAUG00010002208
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sparus aurata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
    Orthologs
    zebrafish all
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    Genomic context

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    See ankdd1b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current fSpaAur1.1 (GCF_900880675.1) 5 NC_044191.1 (13733838..13739113, complement)

    Chromosome 5 - NC_044191.1Genomic Context describing neighboring genes Neighboring gene IQ motif containing GTPase activating protein 2 Neighboring gene coagulation factor II (thrombin) receptor-like 2 Neighboring gene synaptic vesicle glycoprotein 2Ca Neighboring gene POC5 centriolar protein homolog (Chlamydomonas) Neighboring gene polymerase (DNA directed) kappa Neighboring gene ceramide transporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044191.1 Chromosome 5 Reference fSpaAur1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II-specific DNA-binding transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat and death domain-containing protein 1B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSpaAur1.1 Primary Assembly

    Genomic

    1. NC_044191.1 Reference fSpaAur1.1 Primary Assembly

      Range
      13733838..13739113 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030418470.1 → XP_030274330.1  ankyrin repeat and death domain-containing protein 1B isoform X1

      UniProtKB/TrEMBL
      A0A671TS93, A0A671TSI9
      Related
      ENSSAUP00010004256.1, ENSSAUT00010004596.1
      Conserved Domains (2) summary
      PHA03095
      Location:46 → 414
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:227 → 258
      ANK; ANK repeat [structural motif]

    2. XM_030418471.1 → XP_030274331.1  ankyrin repeat and death domain-containing protein 1B isoform X2

      UniProtKB/TrEMBL
      A0A671TSI9
      Related
      ENSSAUP00010004260.1, ENSSAUT00010004600.1
      Conserved Domains (3) summary
      PHA02876
      Location:34 → 324
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:151 → 182
      ANK; ANK repeat [structural motif]
      pfam00023
      Location:16 → 48
      Ank; Ankyrin repeat
    Nucleotide Protein
    Heading Accession and Version

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