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    ptprfa protein tyrosine phosphatase receptor type Fa [ Chanos chanos (milkfish) ]

    Gene ID: 115828127, updated on 17-Mar-2024

    Summary

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    Gene symbol
    ptprfa
    Gene description
    protein tyrosine phosphatase receptor type Fa
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chanos chanos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos
    Also known as
    ptprf
    Orthologs
    human zebrafish all
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    Genomic context

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    See ptprfa in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    100 current fChaCha1.1 (GCF_902362185.1) 14 NC_044508.1 (11080043..11170537, complement)

    Chromosome 14 - NC_044508.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3a Neighboring gene lysine (K)-specific demethylase 4A, genome duplicate a Neighboring gene hydroxypyruvate isomerase Neighboring gene SZT2 subunit of KICSTOR complex

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044508.1 Chromosome 14 Reference fChaCha1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-type tyrosine-protein phosphatase F
    Names
    protein tyrosine phosphatase receptor type F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chanos chanos Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fChaCha1.1 Primary Assembly

    Genomic

    1. NC_044508.1 Reference fChaCha1.1 Primary Assembly

      Range
      11080043..11170537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030792062.1 → XP_030647922.1  receptor-type tyrosine-protein phosphatase F isoform X5

      UniProtKB/TrEMBL
      A0A6J2WUQ0
      Conserved Domains (6) summary
      cd05739
      Location:215 → 283
      Ig3_RPTP_IIa_LAR_like; Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd00063
      Location:288 → 377
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd05738
      Location:121 → 195
      Ig2_RPTP_IIa_LAR_like; Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd14629
      Location:1273 → 1563
      R-PTP-F-2; PTP-like domain of receptor-type tyrosine-protein phosphatase F, repeat 2
      pfam07679
      Location:2 → 93
      I-set; Immunoglobulin I-set domain
      cl28904
      Location:996 → 1271
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    2. XM_030792063.1 → XP_030647923.1  receptor-type tyrosine-protein phosphatase F isoform X6

      UniProtKB/TrEMBL
      A0A6J2WUH6
      Conserved Domains (6) summary
      cd05739
      Location:215 → 283
      Ig3_RPTP_IIa_LAR_like; Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd00063
      Location:288 → 377
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd05738
      Location:121 → 195
      Ig2_RPTP_IIa_LAR_like; Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd14629
      Location:1293 → 1583
      R-PTP-F-2; PTP-like domain of receptor-type tyrosine-protein phosphatase F, repeat 2
      pfam07679
      Location:2 → 93
      I-set; Immunoglobulin I-set domain
      cl28904
      Location:1016 → 1291
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    3. XM_030792059.1 → XP_030647919.1  receptor-type tyrosine-protein phosphatase F isoform X2

      UniProtKB/TrEMBL
      A0A6J2WUJ2

    4. XM_030792058.1 → XP_030647918.1  receptor-type tyrosine-protein phosphatase F isoform X1

      UniProtKB/TrEMBL
      A0A6J2WUH0
      Conserved Domains (7) summary
      cd05739
      Location:215 → 283
      Ig3_RPTP_IIa_LAR_like; Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd00063
      Location:288 → 377
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd05738
      Location:121 → 195
      Ig2_RPTP_IIa_LAR_like; Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd14629
      Location:1569 → 1859
      R-PTP-F-2; PTP-like domain of receptor-type tyrosine-protein phosphatase F, repeat 2
      pfam00041
      Location:976 → 1035
      fn3; Fibronectin type III domain
      pfam07679
      Location:2 → 93
      I-set; Immunoglobulin I-set domain
      cl28904
      Location:1292 → 1567
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    5. XM_030792060.1 → XP_030647920.1  receptor-type tyrosine-protein phosphatase F isoform X3

      UniProtKB/TrEMBL
      A0A6J2WUE9
      Conserved Domains (6) summary
      cd05739
      Location:215 → 283
      Ig3_RPTP_IIa_LAR_like; Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd00063
      Location:288 → 377
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd05738
      Location:121 → 195
      Ig2_RPTP_IIa_LAR_like; Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd14629
      Location:1578 → 1868
      R-PTP-F-2; PTP-like domain of receptor-type tyrosine-protein phosphatase F, repeat 2
      pfam07679
      Location:2 → 93
      I-set; Immunoglobulin I-set domain
      cl28904
      Location:1301 → 1576
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

    6. XM_030792064.1 → XP_030647924.1  receptor-type tyrosine-protein phosphatase F isoform X7

      UniProtKB/TrEMBL
      A0A6J2WUJ6

    7. XM_030792065.1 → XP_030647925.1  receptor-type tyrosine-protein phosphatase F isoform X8

      UniProtKB/TrEMBL
      A0A6J2WUF3

    8. XM_030792061.1 → XP_030647921.1  receptor-type tyrosine-protein phosphatase F isoform X4

      UniProtKB/TrEMBL
      A0A6J2WUK5
      Conserved Domains (6) summary
      cd05739
      Location:228 → 296
      Ig3_RPTP_IIa_LAR_like; Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd00063
      Location:301 → 390
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd05738
      Location:121 → 204
      Ig2_RPTP_IIa_LAR_like; Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR
      cd14629
      Location:1598 → 1888
      R-PTP-F-2; PTP-like domain of receptor-type tyrosine-protein phosphatase F, repeat 2
      pfam07679
      Location:2 → 93
      I-set; Immunoglobulin I-set domain
      cl28904
      Location:1321 → 1596
      PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily
    Nucleotide Protein
    Heading Accession and Version

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