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    spats2 spermatogenesis associated serine rich 2 [ Etheostoma spectabile (orangethroat darter) ]

    Gene ID: 116692066, updated on 18-Mar-2024

    Summary

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    Gene symbol
    spats2
    Gene description
    spermatogenesis associated serine rich 2
    Locus tag
    FQN60_002287
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Etheostoma spectabile
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
    Orthologs
    zebrafish all
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    Genomic context

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    See spats2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current UIUC_Espe_1.0 (GCF_008692095.1) 7 NC_045739.1 (28427926..28447608, complement)

    Chromosome 7 - NC_045739.1Genomic Context describing neighboring genes Neighboring gene ORM1-like protein 2 Neighboring gene poly(A) specific ribonuclease subunit PAN2 Neighboring gene PYM homolog 1, exon junction complex associated factor Neighboring gene matrix metallopeptidase 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045739.1 Chromosome 7 Reference UIUC_Espe_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spermatogenesis-associated serine-rich protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UIUC_Espe_1.0 Primary Assembly

    Genomic

    1. NC_045739.1 Reference UIUC_Espe_1.0 Primary Assembly

      Range
      28427926..28447608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032520062.1 → XP_032375953.1  spermatogenesis-associated serine-rich protein 2-like

      UniProtKB/TrEMBL
      A0A5J5DC85
      Conserved Domains (1) summary
      pfam07139
      Location:81 → 373
      DUF1387; Protein of unknown function (DUF1387)

    2. XM_032520063.1 → XP_032375954.1  spermatogenesis-associated serine-rich protein 2-like

      UniProtKB/TrEMBL
      A0A5J5DC85
      Conserved Domains (1) summary
      pfam07139
      Location:81 → 373
      DUF1387; Protein of unknown function (DUF1387)
    Nucleotide Protein
    Heading Accession and Version

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