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    FE838_RS10350 rhamnogalacturonan lyase domain-containing protein [ Bacteroides thetaiotaomicron ]

    Gene ID: 60925344, updated on 24-Oct-2024

    Summary

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    Gene symbol
    FE838_RS10350
    Gene description
    rhamnogalacturonan lyase domain-containing protein
    Locus tag
    FE838_RS10350
    Gene type
    protein coding
    Organism
    Bacteroides thetaiotaomicron (strain: DSM 2079, nat-host: Homo sapiens, culture-collection: DSM:2079, type-material: type strain of Bacteroides thetaiotaomicron)
    Lineage
    Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
    Old locus tag
    FE838_10800
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    Genomic context

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    NZ_CP040530.1Genomic Context describing neighboring genes Neighboring gene TonB-dependent receptor Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene DUF6250 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP040530.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. Luis AS, et al. Nat Microbiol, 2018 Feb. PMID 29255254, Free PMC Article
    2. Discrete genetic loci in human gut Bacteroides thetaiotaomicron confer pectin metabolism. Li M, et al. Carbohydr Polym, 2021 Nov 15. PMID 34420703
    3. Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. Wu M, et al. Science, 2015 Oct 2. PMID 26430127, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    rhamnogalacturonan lyase domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP040530.1 Reference assembly

      Range
      2789262..2790869
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_008764387.1 MULTISPECIES: rhamnogalacturonan lyase domain-containing protein [Bacteroides]

      See identical proteins and their annotated locations for WP_008764387.1

      UniProtKB/TrEMBL
      A0A0P0FQA6, C6ILJ2, Q8A051
      Conserved Domains (3) summary
      cl23857
      Location:32 → 67
      DUF1565; Protein of unknown function (DUF1565)
      pfam13229
      Location:161 → 336
      Beta_helix; Right handed beta helix region
      pfam16380
      Location:386 → 527
      DUF4990; Domain of unknown function
    Nucleotide Protein
    Heading Accession and Version

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