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    spock1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [ Sander lucioperca (pikeperch) ]

    Gene ID: 116064300, updated on 21-Aug-2024

    Summary

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    Gene symbol
    spock1
    Gene description
    SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1
    See related
    EnsemblRapid:ENSSLUG00000013693
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sander lucioperca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
    Orthologs
    human zebrafish all
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    Genomic context

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    See spock1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current SLUC_FBN_1.2 (GCF_008315115.2) 1 NC_050173.1 (34438014..34545613)
    100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022173012.1 (6263795..6371597, complement)

    Chromosome 1 - NC_050173.1Genomic Context describing neighboring genes Neighboring gene LSM11, U7 small nuclear RNA associated Neighboring gene tRNA-histidine guanylyltransferase 1-like Neighboring gene serine/threonine-protein kinase 33-like Neighboring gene uncharacterized LOC116064301 Neighboring gene uncharacterized LOC116064302 Neighboring gene bicaudal C homolog 2 Neighboring gene DAP3 binding cell death enhancer 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    testican-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLUC_FBN_1.2 Primary Assembly

    Genomic

    1. NC_050173.1 Reference SLUC_FBN_1.2 Primary Assembly

      Range
      34438014..34545613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031319403.2 → XP_031175263.1  testican-1 isoform X1

      Related
      ENSSLUP00000066367.1, ENSSLUT00000082124.1
      Conserved Domains (4) summary
      smart00280
      Location:158 → 194
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:329 → 393
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:262 → 293
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:214 → 326
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins

    2. XM_031319406.2 → XP_031175266.1  testican-1 isoform X3

      UniProtKB/TrEMBL
      A0A8D0D3I0
      Related
      ENSSLUP00000062936.1, ENSSLUT00000074363.1
      Conserved Domains (4) summary
      smart00280
      Location:131 → 167
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:302 → 366
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:235 → 266
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:187 → 299
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins

    3. XM_031319405.2 → XP_031175265.1  testican-1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0D3I0
      Related
      ENSSLUP00000061786.1, ENSSLUT00000071261.1
      Conserved Domains (4) summary
      smart00280
      Location:155 → 191
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:326 → 390
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:259 → 290
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:211 → 323
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins

    4. XM_031319404.2 → XP_031175264.1  testican-1 isoform X1

      Conserved Domains (4) summary
      smart00280
      Location:158 → 194
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:329 → 393
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:262 → 293
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:214 → 326
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins

    5. XM_036007640.1 → XP_035863533.1  testican-1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0D3I0
      Related
      ENSSLUP00000030729.2, ENSSLUT00000031710.2
      Conserved Domains (4) summary
      smart00280
      Location:155 → 191
      KAZAL; Kazal type serine protease inhibitors
      cd00191
      Location:326 → 390
      TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
      cd00252
      Location:259 → 290
      EFh_SPARC_EC; EF-hand motif [structural motif]
      cl25349
      Location:211 → 323
      EFh_SPARC_EC; EF-hand, extracellular calcium-binding (EC) motif, found in secreted protein acidic and rich in cysteine (SPARC)-like proteins
    Nucleotide Protein
    Heading Accession and Version

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