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    eri1 exoribonuclease 1 [ Clupea harengus (Atlantic herring) ]

    Gene ID: 105890703, updated on 18-Jun-2024

    Summary

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    Gene symbol
    eri1
    Gene description
    exoribonuclease 1
    See related
    Ensembl:ENSCHAG00020017499
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Clupea harengus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
    Orthologs
    human zebrafish all
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    Genomic context

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    See eri1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Ch_v2.0.2 (GCF_900700415.2) 12 NC_045163.1 (11431669..11436014, complement)

    Chromosome 12 - NC_045163.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD58 Neighboring gene ribosomal protein L17 Neighboring gene multifunctional ROCO family signaling regulator 1 Neighboring gene germ cell-less, spermatogenesis associated Neighboring gene family with sequence similarity 136 member A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045163.1 Chromosome 12 Reference Ch_v2.0.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3'-5' exoribonuclease 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ch_v2.0.2 Primary Assembly

    Genomic

    1. NC_045163.1 Reference Ch_v2.0.2 Primary Assembly

      Range
      11431669..11436014 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012816771.3 → XP_012672225.2  3'-5' exoribonuclease 1

      UniProtKB/TrEMBL
      A0A6P3VIE1
      Related
      ENSCHAP00020039443.1, ENSCHAT00020042324.1
      Conserved Domains (2) summary
      cd06133
      Location:157 → 337
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam02037
      Location:104 → 134
      SAP; SAP domain
    Nucleotide Protein
    Heading Accession and Version

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