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    LOC109869484 retinoic acid receptor gamma-A [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109869484, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC109869484
    Gene description
    retinoic acid receptor gamma-A
    See related
    Ensembl:ENSOKIG00005011518
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC109869484 in Genome Data Viewer
    Location:
    chromosome: LG24
    Exon count:
    10
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG24 NC_034197.2 (9844726..9925783)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG24 NC_034197.1 (7979831..8082394)

    Linkage Group LG24 - NC_034197.2Genomic Context describing neighboring genes Neighboring gene molybdate-anion transporter Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene calcium-binding and coiled-coil domain-containing protein 1 Neighboring gene homeobox protein Hox-C13a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor gamma-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034197.2 Reference Okis_V2 Primary Assembly

      Range
      9844726..9925783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031804306.1 → XP_031660166.1  retinoic acid receptor gamma-A isoform X1

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:190 → 427
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 169
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_031804308.1 → XP_031660168.1  retinoic acid receptor gamma-A isoform X2

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:189 → 426
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    3. XM_031804310.1 → XP_031660170.1  retinoic acid receptor gamma-A isoform X4

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:186 → 423
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 165
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    4. XM_031804307.1 → XP_031660167.1  retinoic acid receptor gamma-A isoform X1

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:190 → 427
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 169
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    5. XM_020459668.2 → XP_020315257.1  retinoic acid receptor gamma-A isoform X5

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:190 → 420
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 169
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    6. XM_020459669.2 → XP_020315258.1  retinoic acid receptor gamma-A isoform X6

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:189 → 419
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:83 → 168
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    7. XM_031804309.1 → XP_031660169.1  retinoic acid receptor gamma-A isoform X3

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:187 → 424
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    8. XM_020459671.2 → XP_020315260.1  retinoic acid receptor gamma-A isoform X8

      UniProtKB/TrEMBL
      A0A8C7INV4
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 165
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    9. XM_020459670.2 → XP_020315259.1  retinoic acid receptor gamma-A isoform X7

      UniProtKB/TrEMBL
      A0A8C7INV4, A0A8C7M2F8
      Related
      ENSOKIP00005027173.1, ENSOKIT00005028792.1
      Conserved Domains (2) summary
      cd06937
      Location:187 → 417
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    10. XM_031804311.1 → XP_031660171.1  retinoic acid receptor gamma-A isoform X9

      UniProtKB/TrEMBL
      A0A8C7IW02
      Conserved Domains (2) summary
      cd06937
      Location:179 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:72 → 158
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    11. XM_020459673.2 → XP_020315262.1  retinoic acid receptor gamma-A isoform X10

      UniProtKB/TrEMBL
      A0A8C7FFQ0, A0A8C7IW02
      Related
      ENSOKIP00005027348.1, ENSOKIT00005028971.1
      Conserved Domains (2) summary
      cd06937
      Location:176 → 406
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:71 → 155
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
    Nucleotide Protein
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