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    RECQL4 RecQ like helicase 4 [ Corvus moneduloides (New Caledonian crow) ]

    Gene ID: 116435959, updated on 3-Aug-2024

    Summary

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    Gene symbol
    RECQL4
    Gene description
    RecQ like helicase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus moneduloides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
    Orthologs
    human mouse all
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    Genomic context

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    See RECQL4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current bCorMon1.pri (GCF_009650955.1) 1 NC_045476.1 (165686612..165717470)

    Chromosome 1 - NC_045476.1Genomic Context describing neighboring genes Neighboring gene chromosome 1 C8orf82 homolog Neighboring gene leucine rich repeat containing 14 Neighboring gene alanine aminotransferase 1-like Neighboring gene alanine aminotransferase 1-like Neighboring gene alanine aminotransferase 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045476.1 Chromosome 1 Reference bCorMon1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables four-way junction helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA unwinding involved in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent DNA helicase Q4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus moneduloides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCorMon1.pri

    Genomic

    1. NC_045476.1 Reference bCorMon1.pri

      Range
      165686612..165717470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032092755.1 → XP_031948646.1  ATP-dependent DNA helicase Q4 isoform X7

      Conserved Domains (4) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      COG0514
      Location:486 → 880
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    2. XM_032092708.1 → XP_031948599.1  ATP-dependent DNA helicase Q4 isoform X2

      Conserved Domains (4) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      COG0514
      Location:486 → 880
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    3. XM_032092700.1 → XP_031948591.1  ATP-dependent DNA helicase Q4 isoform X1

      Conserved Domains (4) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      COG0514
      Location:486 → 880
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    4. XM_032092727.1 → XP_031948618.1  ATP-dependent DNA helicase Q4 isoform X4

      Conserved Domains (5) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      COG0514
      Location:486 → 880
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      PRK14965
      Location:954 → 1174
      PRK14965; DNA polymerase III subunits gamma and tau; Provisional
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    5. XM_032092737.1 → XP_031948628.1  ATP-dependent DNA helicase Q4 isoform X5

      Conserved Domains (4) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      COG0514
      Location:486 → 900
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    6. XM_032092775.1 → XP_031948666.1  ATP-dependent DNA helicase Q4 isoform X9

      Conserved Domains (5) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      cd18018
      Location:489 → 681
      DEXHc_RecQ4-like; DEAH-box helicase domain of RecQ4 and similar proteins
      cl38915
      Location:695 → 850
      DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    7. XM_032092716.1 → XP_031948607.1  ATP-dependent DNA helicase Q4 isoform X3

      Conserved Domains (5) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      cd18018
      Location:489 → 681
      DEXHc_RecQ4-like; DEAH-box helicase domain of RecQ4 and similar proteins
      cl38915
      Location:695 → 850
      DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    8. XM_032092746.1 → XP_031948637.1  ATP-dependent DNA helicase Q4 isoform X6

      Conserved Domains (4) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      COG0514
      Location:486 → 880
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins

    9. XM_032092764.1 → XP_031948655.1  ATP-dependent DNA helicase Q4 isoform X8

      Conserved Domains (5) summary
      PTZ00449
      Location:21 → 282
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00343
      Location:383 → 398
      ZnF_C2HC; zinc finger
      COG0514
      Location:486 → 880
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      PRK12323
      Location:959 → 1154
      PRK12323; DNA polymerase III subunit gamma/tau
      cd22289
      Location:2 → 50
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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