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    F53F10.2 Antizyme inhibitor 1;BRCA1;Uncharacterized protein [ Caenorhabditis elegans ]

    Gene ID: 171958, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F53F10.2
    Official Full Name
    Antizyme inhibitor 1;BRCA1;Uncharacterized protein
    Primary source
    WormBase:WBGene00018764
    Locus tag
    CELE_F53F10.2
    See related
    AllianceGenome:WB:WBGene00018764
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable catalytic activity. Predicted to be involved in polyamine biosynthetic process. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F53F10.2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    7
    Sequence:
    Chromosome: I; NC_003279.8 (3830562..3834124)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene putative mitochondrial pyruvate carrier 2 Neighboring gene Transmembrane protein 234 homolog Neighboring gene ncRNA Neighboring gene Coiled-coil domain-containing protein 102A Neighboring gene Serine/threonine-protein phosphatase PP1-delta Neighboring gene F-box domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Polyamine-independent Expression of Caenorhabditis elegans Antizyme. Stegehake D, et al. J Biol Chem, 2015 Jul 17. PMID 26032421, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT enables ornithine decarboxylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in polyamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT involved_in putrescine biosynthetic process from ornithine IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    NOT is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Antizyme inhibitor 1;BRCA1;Uncharacterized protein
    NP_001368678.1
    • Confirmed by transcript evidence
    NP_001368679.1
    • Confirmed by transcript evidence
    NP_001379758.1
    • Confirmed by transcript evidence
    NP_001380232.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      3830562..3834124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001393290.1 → NP_001379758.1  Antizyme inhibitor 1 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O01579
      Conserved Domains (1) summary
      cl00261
      Location:55 → 416
      PLPDE_III; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes

    2. NM_001393288.1 → NP_001380232.1  Uncharacterized protein CELE_F53F10.2 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATM2

    3. NM_001381737.3 → NP_001368678.1  Uncharacterized protein CELE_F53F10.2 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATM9

    4. NM_001381744.1 → NP_001368679.1  BRCA1, partial [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATP6

    RNA

    1. NR_132557.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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