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    EXOSC1 exosome component 1 [ Parus major (Great Tit) ]

    Gene ID: 107206702, updated on 3-Aug-2024

    Summary

    Gene symbol
    EXOSC1
    Gene description
    exosome component 1
    See related
    Ensembl:ENSPMJG00000004134
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parus major
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
    Orthologs
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    Genomic context

    See EXOSC1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Parus_major1.1 (GCF_001522545.3) 6 NC_031775.1 (20501237..20503668)
    100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 6 NC_029275.1 (19495218..19497571)

    Chromosome 6 - NC_031775.1Genomic Context describing neighboring genes Neighboring gene ubiquitin domain containing 1 Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component Neighboring gene zinc finger DHHC-type palmitoyltransferase 16 Neighboring gene phosphoglycerate mutase 1 Neighboring gene ribosomal RNA processing 12 homolog

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    exosome complex component CSL4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Parus_major1.1 Primary Assembly

    Genomic

    1. NC_031775.1 Reference Parus_major1.1 Primary Assembly

      Range
      20501237..20503668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015632728.3XP_015488214.1  exosome complex component CSL4 isoform X3

      Conserved Domains (2) summary
      cd05791
      Location:62154
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:844
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
    2. XM_015632729.2XP_015488215.1  exosome complex component CSL4 isoform X4

      Related
      ENSPMJP00000005076.1, ENSPMJT00000007125.1
      Conserved Domains (2) summary
      cd05791
      Location:62154
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:843
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
    3. XM_033515862.1XP_033371753.1  exosome complex component CSL4 isoform X1

      Conserved Domains (2) summary
      cd05791
      Location:79171
      S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
      pfam14382
      Location:2559
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
    4. XM_015632726.3XP_015488212.1  exosome complex component CSL4 isoform X2

      Conserved Domains (2) summary
      cd05791
      Location:79171
      S1_CSL4; S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam14382
      Location:2560
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region