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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001381910.1 → NP_001368839.1 synaptophysin-like protein 1 isoform c
Status: VALIDATED
- Source sequence(s)
-
AC005095
- Consensus CDS
-
CCDS94175.1
- UniProtKB/TrEMBL
- A0A994J846, A8K865
- Related
- ENSP00000516340.1, ENST00000706299.1
- Conserved Domains (1) summary
-
- pfam01284
Location:135 → 257
- MARVEL; Membrane-associating domain
-
NM_001381911.1 → NP_001368840.1 synaptophysin-like protein 1 isoform d
Status: VALIDATED
- Source sequence(s)
-
AC005095
- UniProtKB/TrEMBL
-
A8K865
- Conserved Domains (1) summary
-
- pfam01284
Location:117 → 239
- MARVEL; Membrane-associating domain
-
NM_001381912.1 → NP_001368841.1 synaptophysin-like protein 1 isoform e precursor
Status: VALIDATED
- Source sequence(s)
-
AC005095
- UniProtKB/TrEMBL
-
A8K865
- Conserved Domains (1) summary
-
- pfam01284
Location:87 → 209
- MARVEL; Membrane-associating domain
-
NM_001381913.1 → NP_001368842.1 synaptophysin-like protein 1 isoform f
Status: VALIDATED
- Source sequence(s)
-
AC005095
- Conserved Domains (2) summary
-
- pfam01284
Location:109 → 186
- MARVEL; Membrane-associating domain
- pfam03896
Location:67 → 148
- TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit
-
NM_001381915.1 → NP_001368844.1 synaptophysin-like protein 1 isoform g
Status: VALIDATED
- Source sequence(s)
-
AC005095
- Conserved Domains (1) summary
-
- pfam01284
Location:24 → 102
- MARVEL; Membrane-associating domain
-
NM_001381916.1 → NP_001368845.1 synaptophysin-like protein 1 isoform h
Status: VALIDATED
- Source sequence(s)
-
AC005095
-
NM_001381917.1 → NP_001368846.1 synaptophysin-like protein 1 isoform i precursor
Status: VALIDATED
- Source sequence(s)
-
AC005095
- Conserved Domains (1) summary
-
- pfam01284
Location:1 → 81
- MARVEL; Membrane-associating domain
-
NM_001381918.1 → NP_001368847.1 synaptophysin-like protein 1 isoform j
Status: VALIDATED
- Description
- Transcript Variant: This variant (10), as well as variant 11, encodes isoform j.
- Source sequence(s)
-
AC005095
- Consensus CDS
-
CCDS94174.1
- UniProtKB/TrEMBL
- A0A994J5J4, A8K865
-
NM_001381919.1 → NP_001368848.1 synaptophysin-like protein 1 isoform j
Status: VALIDATED
- Description
- Transcript Variant: This variant (11), as well as variant 10, encodes isoform j.
- Source sequence(s)
-
AC005095
- Consensus CDS
-
CCDS94174.1
- UniProtKB/TrEMBL
- A0A994J5J4, A8K865
- Related
- ENSP00000516339.1, ENST00000706298.1
-
NM_001381920.1 → NP_001368849.1 synaptophysin-like protein 1 isoform k
Status: VALIDATED
- Description
- Transcript Variant: This variant (12), as well as variant 13, encodes isoform k.
- Source sequence(s)
-
AC005095
- Consensus CDS
-
CCDS94173.1
- UniProtKB/TrEMBL
-
C9JYN0
- Conserved Domains (1) summary
-
- pfam01284
Location:91 → 185
- MARVEL; Membrane-associating domain
-
NM_001381921.1 → NP_001368850.1 synaptophysin-like protein 1 isoform k
Status: VALIDATED
- Description
- Transcript Variant: This variant (13), as well as variant 12, encodes isoform k.
- Source sequence(s)
-
AC005095
- Consensus CDS
-
CCDS94173.1
- UniProtKB/TrEMBL
-
C9JYN0
- Related
- ENSP00000419070.1, ENST00000470347.1
- Conserved Domains (1) summary
-
- pfam01284
Location:91 → 185
- MARVEL; Membrane-associating domain
-
NM_006754.5 → NP_006745.1 synaptophysin-like protein 1 isoform a
See identical proteins and their annotated locations for NP_006745.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AC005095
- Consensus CDS
-
CCDS5736.1
- UniProtKB/Swiss-Prot
- A4D0R2, Q16563, Q96AR8
- UniProtKB/TrEMBL
- A4D0R1, A8K865
- Related
- ENSP00000011473.2, ENST00000011473.6
- Conserved Domains (1) summary
-
- pfam01284
Location:109 → 231
- MARVEL; Membrane-associating domain
-
NM_182715.4 → NP_874384.1 synaptophysin-like protein 1 isoform b
See identical proteins and their annotated locations for NP_874384.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (b) has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AC005095
- Consensus CDS
-
CCDS47685.1
- UniProtKB/TrEMBL
-
A8K865
- Related
- ENSP00000388336.2, ENST00000455385.7
- Conserved Domains (1) summary
-
- pfam01284
Location:86 → 213
- MARVEL; Membrane-associating domain
RNA
-
NR_167729.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC005095
- Related
-
ENST00000706297.1
-
NR_167730.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC005095
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
106090505..106112576 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
107405910..107427970 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)