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    LOC117354678 oocyte zinc finger protein XlCOF6-like [ Geotrypetes seraphini ]

    Gene ID: 117354678, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC117354678
    Gene description
    oocyte zinc finger protein XlCOF6-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geotrypetes seraphini
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
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    Genomic context

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    See LOC117354678 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current aGeoSer1.1 (GCF_902459505.1) 2 NC_047085.1 (519448138..519488036)

    Chromosome 2 - NC_047085.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 883-like Neighboring gene zinc finger protein 850-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene zinc finger protein 850-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047085.1 Chromosome 2 Reference aGeoSer1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oocyte zinc finger protein XlCOF6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aGeoSer1.1 Primary Assembly

    Genomic

    1. NC_047085.1 Reference aGeoSer1.1 Primary Assembly

      Range
      519448138..519488036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033932540.1 → XP_033788431.1  oocyte zinc finger protein XlCOF6-like isoform X1

      UniProtKB/TrEMBL
      A0A6P8QP47
      Conserved Domains (4) summary
      cd07765
      Location:11 → 50
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      COG5048
      Location:213 → 672
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:409 → 429
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:673 → 698
      zf-H2C2_2; Zinc-finger double domain

    2. XM_033932541.1 → XP_033788432.1  oocyte zinc finger protein XlCOF6-like isoform X2

      UniProtKB/TrEMBL
      A0A6P8PIF5
      Conserved Domains (4) summary
      cd07765
      Location:11 → 50
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      COG5048
      Location:212 → 671
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:408 → 428
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:672 → 697
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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