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    LOC117363217 DNA repair protein complementing XP-G cells-like [ Geotrypetes seraphini ]

    Gene ID: 117363217, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC117363217
    Gene description
    DNA repair protein complementing XP-G cells-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geotrypetes seraphini
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
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    Genomic context

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    See LOC117363217 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current aGeoSer1.1 (GCF_902459505.1) 6 NC_047089.1 (120402039..121052553)

    Chromosome 6 - NC_047089.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 10 member 2 Neighboring gene nucleolus and neural progenitor protein Neighboring gene homocysteine S-methyltransferase 1-like Neighboring gene methyltransferase 21C, AARS1 lysine Neighboring gene zinc finger protein 143-like Neighboring gene tripeptidyl peptidase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047089.1 Chromosome 6 Reference aGeoSer1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein complementing XP-G cells-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aGeoSer1.1 Primary Assembly

    Genomic

    1. NC_047089.1 Reference aGeoSer1.1 Primary Assembly

      Range
      120402039..121052553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033950644.1 → XP_033806535.1  DNA repair protein complementing XP-G cells-like isoform X1

      UniProtKB/TrEMBL
      A0A6P8RM99
      Conserved Domains (1) summary
      TIGR00600
      Location:1 → 979
      rad2; DNA excision repair protein (rad2)

    2. XM_033950648.1 → XP_033806539.1  DNA repair protein complementing XP-G cells-like isoform X2

      UniProtKB/TrEMBL
      A0A6P8RMJ0
      Conserved Domains (1) summary
      TIGR00600
      Location:1 → 930
      rad2; DNA excision repair protein (rad2)

    3. XM_033950643.1 → XP_033806534.1  DNA repair protein complementing XP-G cells-like isoform X1

      UniProtKB/TrEMBL
      A0A6P8RM99
      Conserved Domains (1) summary
      TIGR00600
      Location:1 → 979
      rad2; DNA excision repair protein (rad2)

    4. XM_033950645.1 → XP_033806536.1  DNA repair protein complementing XP-G cells-like isoform X1

      UniProtKB/TrEMBL
      A0A6P8RM99
      Conserved Domains (1) summary
      TIGR00600
      Location:1 → 979
      rad2; DNA excision repair protein (rad2)

    5. XM_033950647.1 → XP_033806538.1  DNA repair protein complementing XP-G cells-like isoform X1

      UniProtKB/TrEMBL
      A0A6P8RM99
      Conserved Domains (1) summary
      TIGR00600
      Location:1 → 979
      rad2; DNA excision repair protein (rad2)
    Nucleotide Protein
    Heading Accession and Version

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