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    TRPC4 transient receptor potential cation channel subfamily C member 4 [ Geotrypetes seraphini ]

    Gene ID: 117363218, updated on 19-Mar-2024

    Summary

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    Gene symbol
    TRPC4
    Gene description
    transient receptor potential cation channel subfamily C member 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geotrypetes seraphini
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
    Orthologs
    human mouse all
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    Genomic context

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    See TRPC4 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current aGeoSer1.1 (GCF_902459505.1) 6 NC_047089.1 (56278259..56463739, complement)

    Chromosome 6 - NC_047089.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117362972 Neighboring gene periostin Neighboring gene ubiquitin fold modifier 1 Neighboring gene FRAS1 related extracellular matrix 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047089.1 Chromosome 6 Reference aGeoSer1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aGeoSer1.1 Primary Assembly

    Genomic

    1. NC_047089.1 Reference aGeoSer1.1 Primary Assembly

      Range
      56278259..56463739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033950649.1 → XP_033806540.1  short transient receptor potential channel 4

      UniProtKB/TrEMBL
      A0A6P8RMA3
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 752
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:35 → 67
      ANK; ANK repeat [structural motif]

    2. XM_033950650.1 → XP_033806541.1  short transient receptor potential channel 4

      UniProtKB/TrEMBL
      A0A6P8RMA3
      Conserved Domains (2) summary
      TIGR00870
      Location:17 → 752
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:35 → 67
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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