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    zbtb42 zinc finger and BTB domain containing 42 [ Pseudochaenichthys georgianus (South Georgia icefish) ]

    Gene ID: 117468205, updated on 19-Mar-2024

    Summary

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    Gene symbol
    zbtb42
    Gene description
    zinc finger and BTB domain containing 42
    See related
    EnsemblRapid:ENSPGEG00000014887
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudochaenichthys georgianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
    Orthologs
    human zebrafish all
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    Genomic context

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    See zbtb42 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current fPseGeo1.1 (GCF_902827115.1) 22 NC_047524.1 (18212221..18216583, complement)

    Chromosome 22 - NC_047524.1Genomic Context describing neighboring genes Neighboring gene adenylosuccinate synthetase isozyme 1 C Neighboring gene SIVA1, apoptosis-inducing factor Neighboring gene v-akt murine thymoma viral oncogene homolog 1 Neighboring gene centrosomal protein 170B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047524.1 Chromosome 22 Reference fPseGeo1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 18.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPseGeo1.1

    Genomic

    1. NC_047524.1 Reference fPseGeo1.1

      Range
      18212221..18216583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034112245.1 → XP_033968136.1  zinc finger and BTB domain-containing protein 18.2 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:388 → 513
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:444 → 464
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18325
      Location:1 → 128
      BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins
      pfam13465
      Location:457 → 479
      zf-H2C2_2; Zinc-finger double domain

    2. XM_034112244.1 → XP_033968135.1  zinc finger and BTB domain-containing protein 18.2 isoform X1

      Related
      ENSPGEP00000032385.1, ENSPGET00000033799.1
      Conserved Domains (4) summary
      COG5048
      Location:394 → 519
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:450 → 470
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18325
      Location:7 → 134
      BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins
      pfam13465
      Location:463 → 485
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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