U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC101876865 bassoon presynaptic cytomatrix protein [ Melopsittacus undulatus (budgerigar) ]

    Gene ID: 101876865, updated on 3-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101876865
    Gene description
    bassoon presynaptic cytomatrix protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Melopsittacus undulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittaculidae; Melopsittacus
    Also known as
    BSN
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101876865 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current bMelUnd1.mat.Z (GCF_012275295.1) 9 NC_047535.1 (38608903..38676942)
    103 previous assembly Melopsittacus_undulatus_6.3 (GCF_000238935.1) Unplaced Scaffold NW_004847959.1 (504774..571100, complement)

    Chromosome 9 - NC_047535.1Genomic Context describing neighboring genes Neighboring gene CaM kinase like vesicle associated Neighboring gene TRAF interacting protein Neighboring gene acylamino-acid-releasing enzyme-like Neighboring gene acylamino-acid-releasing enzyme

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in presynaptic active zone assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in GABA-ergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton of presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in glutamatergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein bassoon

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Melopsittacus undulatus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bMelUnd1.mat.Z

    Genomic

    1. NC_047535.1 Reference bMelUnd1.mat.Z

      Range
      38608903..38676942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034066210.1 → XP_033922101.1  protein bassoon

      UniProtKB/TrEMBL
      A0A8V5HDT0
      Conserved Domains (5) summary
      PHA03247
      Location:3495 → 3752
      PHA03247; large tegument protein UL36; Provisional
      PHA03307
      Location:385 → 683
      PHA03307; transcriptional regulator ICP4; Provisional
      PRK12323
      Location:2863 → 3051
      PRK12323; DNA polymerase III subunit gamma/tau
      cd15773
      Location:54 → 117
      FYVE1_BSN; FYVE-related domain 1 found in protein bassoon
      cd15775
      Location:319 → 383
      FYVE2_BSN; FYVE-related domain 2 found in protein bassoon
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.