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    cygb cytoglobin [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100136084, updated on 12-May-2024

    Summary

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    Gene symbol
    cygb
    Gene description
    cytoglobin
    See related
    Ensembl:ENSOMYG00000032091
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See cygb in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (78584185..78594547, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (75506707..75513871, complement)

    Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene fas-binding factor 1 homolog Neighboring gene uncharacterized LOC110538515 Neighboring gene phosphoribosyl pyrophosphate synthase-associated protein 1 Neighboring gene uncharacterized LOC110538517 Neighboring gene GTP-binding protein Rhes-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxygen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oxygen transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoglobin
    NP_001117862.1
    XP_036792569.1
    XP_036792570.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124390.1 → NP_001117862.1  cytoglobin

      See identical proteins and their annotated locations for NP_001117862.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ547802
      UniProtKB/TrEMBL
      A0A060XC69, Q802S6
      Related
      ENSOMYP00000069159.2, ENSOMYT00000075337.2
      Conserved Domains (1) summary
      cl21461
      Location:19 → 171
      Globin-like; Globin-like protein superfamily

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      78584185..78594547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036936674.1 → XP_036792569.1  cytoglobin isoform X1

      UniProtKB/TrEMBL
      A0A060XC69, Q802S6
      Conserved Domains (1) summary
      cl21461
      Location:19 → 171
      Globin-like; Globin-like protein superfamily

    2. XM_036936675.1 → XP_036792570.1  cytoglobin isoform X1

      UniProtKB/TrEMBL
      A0A060XC69, Q802S6
      Conserved Domains (1) summary
      cl21461
      Location:19 → 171
      Globin-like; Globin-like protein superfamily
    Nucleotide Protein
    Heading Accession and Version

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