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    LOC118032070 protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [ Populus alba (white poplar) ]

    Gene ID: 118032070, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC118032070
    Gene description
    protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
    Locus tag
    D5086_0000200300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus alba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC118032070 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023271962.1 (465610..468281, complement)

    NW_023271962.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 83-like Neighboring gene endonuclease III homolog 1, chloroplastic Neighboring gene gamma-secretase subunit APH1-like Neighboring gene uncharacterized LOC118032072

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023271962 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CAAX-protein geranylgeranyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein farnesyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein farnesylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein geranylgeranylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CAAX-protein geranylgeranyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein farnesyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM523922v1 Primary Assembly

    Genomic

    1. NW_023271962.1 Reference ASM523922v1 Primary Assembly

      Range
      465610..468281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035036664.1 → XP_034892555.1  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

      UniProtKB/TrEMBL
      A0A4U5PPI3
      Conserved Domains (1) summary
      PLN02789
      Location:5 → 326
      PLN02789; farnesyltranstransferase
    Nucleotide Protein
    Heading Accession and Version

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