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    mef2cb myocyte enhancer factor 2cb [ Hippoglossus stenolepis (Pacific halibut) ]

    Gene ID: 118115619, updated on 8-May-2024

    Summary

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    Gene symbol
    mef2cb
    Gene description
    myocyte enhancer factor 2cb
    Locus tag
    HST_G00096120
    See related
    EnsemblRapid:ENSHSTG00010024545
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hippoglossus stenolepis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
    Orthologs
    human zebrafish all
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    Genomic context

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    See mef2cb in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current HSTE1.2 (GCF_022539355.2) 9 NC_061491.1 (13550653..13623401)
    100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 9 NC_048935.1 (13456317..13529256)

    Chromosome 9 - NC_061491.1Genomic Context describing neighboring genes Neighboring gene drebrin-like protein A Neighboring gene uncharacterized LOC118115567 Neighboring gene uncharacterized LOC118115621 Neighboring gene transmembrane protein 161B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myocyte enhancer factor 2cb

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HSTE1.2 Primary Assembly

    Genomic

    1. NC_061491.1 Reference HSTE1.2 Primary Assembly

      Range
      13550653..13623401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035166888.2 → XP_035022779.1  myocyte enhancer factor 2cb isoform X1

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 199
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    2. XM_047341522.1 → XP_047197478.1  myocyte enhancer factor 2cb isoform X1

    3. XM_035166893.2 → XP_035022784.1  myocyte enhancer factor 2cb isoform X4

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 199
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    4. XM_035166891.2 → XP_035022782.1  myocyte enhancer factor 2cb isoform X3

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 199
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    5. XM_035166890.2 → XP_035022781.1  myocyte enhancer factor 2cb isoform X2

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 198
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    6. XM_035166894.2 → XP_035022785.1  myocyte enhancer factor 2cb isoform X5

      Conserved Domains (3) summary
      COG5068
      Location:1 → 323
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 198
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    7. XM_035166896.2 → XP_035022787.1  myocyte enhancer factor 2cb isoform X7

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:107 → 153
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    8. XM_035166897.2 → XP_035022788.1  myocyte enhancer factor 2cb isoform X8

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:107 → 152
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    9. XM_035166900.2 → XP_035022791.1  myocyte enhancer factor 2cb isoform X12

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:107 → 152
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    10. XM_035166898.2 → XP_035022789.1  myocyte enhancer factor 2cb isoform X9

      Conserved Domains (3) summary
      COG5068
      Location:1 → 268
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:107 → 151
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    11. XM_035166910.2 → XP_035022801.1  myocyte enhancer factor 2cb isoform X21

      Conserved Domains (2) summary
      COG5068
      Location:1 → 276
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    12. XM_035166899.2 → XP_035022790.1  myocyte enhancer factor 2cb isoform X11

      Conserved Domains (2) summary
      COG5068
      Location:1 → 267
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    13. XM_035166905.2 → XP_035022796.1  myocyte enhancer factor 2cb isoform X17

      Related
      ENSHSTP00010064386.1, ENSHSTT00010068959.1
      Conserved Domains (2) summary
      COG5068
      Location:1 → 275
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    14. XM_035166901.2 → XP_035022792.1  myocyte enhancer factor 2cb isoform X13

      Conserved Domains (2) summary
      COG5068
      Location:1 → 264
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    15. XM_035166909.2 → XP_035022800.1  myocyte enhancer factor 2cb isoform X20

      Related
      ENSHSTP00010064369.1, ENSHSTT00010068942.1
      Conserved Domains (2) summary
      COG5068
      Location:1 → 272
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    16. XM_035166906.2 → XP_035022797.1  myocyte enhancer factor 2cb isoform X18

      Conserved Domains (3) summary
      COG5068
      Location:1 → 320
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 198
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    17. XM_035166895.2 → XP_035022786.1  myocyte enhancer factor 2cb isoform X6

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 199
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    18. XM_035166902.2 → XP_035022793.1  myocyte enhancer factor 2cb isoform X14

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:107 → 153
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    19. XM_047341523.1 → XP_047197479.1  myocyte enhancer factor 2cb isoform X10

      Related
      ENSHSTP00010064377.1, ENSHSTT00010068950.1

    20. XM_035166904.2 → XP_035022795.1  myocyte enhancer factor 2cb isoform X16

      Related
      ENSHSTP00010064385.1, ENSHSTT00010068958.1
      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:107 → 153
      HJURP_C; Holliday junction regulator protein family C-terminal repeat

    21. XM_035166903.2 → XP_035022794.1  myocyte enhancer factor 2cb isoform X15

      Related
      ENSHSTP00010064382.1, ENSHSTT00010068955.1
      Conserved Domains (2) summary
      COG5068
      Location:1 → 277
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    22. XM_035166907.2 → XP_035022798.1  myocyte enhancer factor 2cb isoform X19

      Conserved Domains (2) summary
      COG5068
      Location:1 → 274
      ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    23. XM_035166889.2 → XP_035022780.1  myocyte enhancer factor 2cb isoform X1

      Conserved Domains (2) summary
      cd00265
      Location:2 → 78
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam12347
      Location:155 → 199
      HJURP_C; Holliday junction regulator protein family C-terminal repeat
    Nucleotide Protein
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