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    LOC113836537 uncharacterized LOC113836537 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 113836537, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC113836537
    Gene description
    uncharacterized LOC113836537
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
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    Genomic context

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    See LOC113836537 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615946.1 (112165..116558, complement)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (153652941..153657419, complement)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (39206675..39209661, complement)

    NW_003615946.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 2 Neighboring gene forkhead box protein I3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in virion assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: uncharacterized protein LOC113836537

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003615946.1 Reference CriGri_1.0 Primary Assembly

      Range
      112165..116558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035437335.1 → XP_035293226.1  LOW QUALITY PROTEIN: uncharacterized protein LOC113836537 isoform X1

      Conserved Domains (8) summary
      cd03715
      Location:481 → 694
      RT_ZFREV_like; A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or ...
      cd09273
      Location:941 → 1073
      RNase_HI_RT_Bel; Bel/Pao family of RNase HI in long-term repeat retroelements
      pfam09337
      Location:1078 → 1119
      zf-H2C2; His(2)-Cys(2) zinc finger
      pfam00665
      Location:1139 → 1234
      rve; Integrase core domain
      pfam02093
      Location:7 → 207
      Gag_p30; Gag P30 core shell protein
      pfam17919
      Location:759 → 855
      RT_RNaseH_2; RNase H-like domain found in reverse transcriptase
      pfam18697
      Location:1345 → 1416
      MLVIN_C; Murine leukemia virus (MLV) integrase (IN) C-terminal domain
      cl11403
      Location:312 → 404
      pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048596.1 Alternate CriGri-PICRH-1.0

      Range
      153652941..153657419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035441660.1 → XP_035297551.1  LOW QUALITY PROTEIN: uncharacterized protein LOC113836537 isoform X2

      UniProtKB/TrEMBL
      A0A9J7K2Z1
      Conserved Domains (8) summary
      cd06095
      Location:552 → 633
      RP_RTVL_H_like; Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements
      PHA03247
      Location:81 → 222
      PHA03247; large tegument protein UL36; Provisional
      cd03715
      Location:717 → 930
      RT_ZFREV_like; A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or ...
      cd09273
      Location:1181 → 1321
      RNase_HI_RT_Bel; Bel/Pao family of RNase HI in long-term repeat retroelements
      cl07828
      Location:1340 → 1432
      zf-H2C2; His(2)-Cys(2) zinc finger
      pfam01140
      Location:2 → 127
      Gag_MA; Matrix protein (MA), p15
      pfam02093
      Location:235 → 443
      Gag_p30; Gag P30 core shell protein
      pfam17919
      Location:995 → 1075
      RT_RNaseH_2; RNase H-like domain found in reverse transcriptase

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048600.1 Alternate CriGri-PICRH-1.0

      Range
      39206675..39209661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027423933.2 → XP_027279734.1  LOW QUALITY PROTEIN: uncharacterized protein LOC113836537 isoform X3

      UniProtKB/TrEMBL
      A0A9J7G970
    Nucleotide Protein Strain
    Heading Accession and Version

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