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    FOXO3 forkhead box O3 [ Cygnus atratus (black swan) ]

    Gene ID: 118257141, updated on 20-Mar-2024

    Summary

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    Gene symbol
    FOXO3
    Gene description
    forkhead box O3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus atratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See FOXO3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 3 NC_066364.1 (48365994..48453391)
    100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336678.1 (1265805..1356025, complement)

    Chromosome 3 - NC_066364.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 3 Neighboring gene AFG1 like ATPase Neighboring gene uncharacterized LOC118257143 Neighboring gene uncharacterized LOC118257128 Neighboring gene armadillo repeat containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein O3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Genomic

    1. NC_066364.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

      Range
      48365994..48453391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035564797.2 → XP_035420690.1  forkhead box protein O3

      Conserved Domains (3) summary
      pfam16675
      Location:423 → 498
      FOXO_KIX_bdg; KIX-binding domain of forkhead box O, CR2
      pfam16676
      Location:597 → 635
      FOXO-TAD; Transactivation domain of FOXO protein family
      cd20061
      Location:148 → 230
      FH_FOXO3; Forkhead (FH) domain found in Forkhead box protein O3 (FOXO3)
    Nucleotide Protein
    Heading Accession and Version

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