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    LMO2 LIM domain only 2 [ Zalophus californianus (California sea lion) ]

    Gene ID: 113914981, updated on 15-Mar-2024

    Summary

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    Gene symbol
    LMO2
    Gene description
    LIM domain only 2
    See related
    EnsemblRapid:ENSZCAG00025018582
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zalophus californianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
    Orthologs
    human mouse all
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    Genomic context

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    See LMO2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current mZalCal1.pri.v2 (GCF_009762305.2) 11 NC_045605.1 (86313280..86334567, complement)
    100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020879070.1 (26843078..26864365)

    Chromosome 11 - NC_045605.1Genomic Context describing neighboring genes Neighboring gene F-box protein 3 Neighboring gene uncharacterized LOC113915413 Neighboring gene cell cycle associated protein 1 Neighboring gene N-acetyltransferase 10 Neighboring gene ankyrin repeat and BTB domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhombotin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mZalCal1.pri.v2 Primary Assembly

    Genomic

    1. NC_045605.1 Reference mZalCal1.pri.v2 Primary Assembly

      Range
      86313280..86334567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027580624.2 → XP_027436425.2  rhombotin-2 isoform X1

      UniProtKB/TrEMBL
      A0A6J2BWP6
      Related
      ENSZCAP00025029096.1, ENSZCAT00025032976.1
      Conserved Domains (2) summary
      cd09384
      Location:177 → 232
      LIM1_LMO2; The first LIM domain of LMO2 (LIM domain only protein 2)
      cd09385
      Location:241 → 296
      LIM2_LMO2; The second LIM domain of LMO2 (LIM domain only protein 2)

    2. XM_027580625.2 → XP_027436426.1  rhombotin-2 isoform X2

      UniProtKB/TrEMBL
      A0A6J2BZD5
      Related
      ENSZCAP00025029115.1, ENSZCAT00025033001.1
      Conserved Domains (2) summary
      cd09384
      Location:94 → 149
      LIM1_LMO2; The first LIM domain of LMO2 (LIM domain only protein 2)
      cd09385
      Location:158 → 213
      LIM2_LMO2; The second LIM domain of LMO2 (LIM domain only protein 2)

    RNA

    1. XR_003517560.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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