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    CLP1 cleavage factor polyribonucleotide kinase subunit 1 [ Rousettus aegyptiacus (Egyptian rousette) ]

    Gene ID: 107518402, updated on 11-Apr-2024

    Summary

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    Gene symbol
    CLP1
    Gene description
    cleavage factor polyribonucleotide kinase subunit 1
    Locus tag
    HJG63_003007
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rousettus aegyptiacus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
    Orthologs
    human mouse all
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    Genomic context

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    See CLP1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416308.1 (112316501..112324883)
    100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015494701.1 (445169..455529, complement)

    NW_023416308.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene serpin family G member 1 Neighboring gene yippee like 4 Neighboring gene zinc finger DHHC-type palmitoyltransferase 5 Neighboring gene mediator complex subunit 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyribonucleotide 5'-hydroxyl-kinase Clp1
    Names
    cleavage and polyadenylation factor I subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mRouAeg1.p

    Genomic

    1. NW_023416308.1 Reference mRouAeg1.p

      Range
      112316501..112324883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016160011.2 → XP_016015497.1  polyribonucleotide 5'-hydroxyl-kinase Clp1

      UniProtKB/TrEMBL
      A0A7J8GWY0, A0A7J8GY65
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    2. XM_016160010.2 → XP_016015496.1  polyribonucleotide 5'-hydroxyl-kinase Clp1

      UniProtKB/TrEMBL
      A0A7J8GWY0, A0A7J8GY65
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    3. XM_016160012.2 → XP_016015498.1  polyribonucleotide 5'-hydroxyl-kinase Clp1

      UniProtKB/TrEMBL
      A0A7J8GWY0, A0A7J8GY65
      Conserved Domains (2) summary
      COG5623
      Location:14 → 423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
    Nucleotide Protein
    Heading Accession and Version

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