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    LOC118425435 fermitin family homolog 2-like [ Branchiostoma floridae (Florida lancelet) ]

    Gene ID: 118425435, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC118425435
    Gene description
    fermitin family homolog 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma floridae
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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    Genomic context

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    See LOC118425435 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Bfl_VNyyK (GCF_000003815.2) 1 NC_049979.1 (9358125..9391165, complement)

    Chromosome 1 - NC_049979.1Genomic Context describing neighboring genes Neighboring gene kelch-like protein 24 Neighboring gene ral GTPase-activating protein subunit beta-like Neighboring gene tetratricopeptide repeat protein 8-like Neighboring gene Golgi-associated plant pathogenesis-related protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049979.1 Chromosome 1 Reference Bfl_VNyyK Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-substrate junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fermitin family homolog 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bfl_VNyyK Primary Assembly

    Genomic

    1. NC_049979.1 Reference Bfl_VNyyK Primary Assembly

      Range
      9358125..9391165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035834258.1 → XP_035690151.1  fermitin family homolog 2-like isoform X2

      UniProtKB/TrEMBL
      A0A9J7N5C7, C3ZKQ8
      Conserved Domains (6) summary
      smart00295
      Location:289 → 370
      B41; Band 4.1 homologues
      cd01237
      Location:409 → 533
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:599 → 689
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17095
      Location:12 → 91
      FERM_F0_kindlins; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in the kindlin family
      cd17096
      Location:92 → 314
      FERM_F1_kindlins; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in the kindlin family
      pfam00373
      Location:553 → 605
      FERM_M; FERM central domain

    2. XM_035834249.1 → XP_035690142.1  fermitin family homolog 2-like isoform X1

      UniProtKB/TrEMBL
      A0A9J7LVP3, C3ZKQ8
      Conserved Domains (6) summary
      smart00295
      Location:289 → 370
      B41; Band 4.1 homologues
      cd01237
      Location:409 → 533
      PH_fermitin; Fermitin family pleckstrin homology (PH) domain
      cd13205
      Location:602 → 692
      FERM_C_fermitin; FERM domain C-lobe of the Fermitin family
      cd17095
      Location:12 → 91
      FERM_F0_kindlins; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in the kindlin family
      cd17096
      Location:92 → 314
      FERM_F1_kindlins; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in the kindlin family
      pfam00373
      Location:564 → 608
      FERM_M; FERM central domain
    Nucleotide Protein Strain
    Heading Accession and Version

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