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    LOC118428211 FERM, ARHGEF and pleckstrin domain-containing protein 1-like [ Branchiostoma floridae (Florida lancelet) ]

    Gene ID: 118428211, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC118428211
    Gene description
    FERM, ARHGEF and pleckstrin domain-containing protein 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma floridae
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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    Genomic context

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    See LOC118428211 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    100 current Bfl_VNyyK (GCF_000003815.2) 12 NC_049990.1 (9894502..9928437, complement)

    Chromosome 12 - NC_049990.1Genomic Context describing neighboring genes Neighboring gene angiopoietin-related protein 2-like Neighboring gene ADP-ribosylation factor GTPase-activating protein 1-like Neighboring gene SPRY domain-containing protein 3-like Neighboring gene type-1 angiotensin II receptor-associated protein-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049990.1 Chromosome 12 Reference Bfl_VNyyK Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytoskeletal protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FERM, ARHGEF and pleckstrin domain-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bfl_VNyyK Primary Assembly

    Genomic

    1. NC_049990.1 Reference Bfl_VNyyK Primary Assembly

      Range
      9894502..9928437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035838220.1 → XP_035694113.1  FERM, ARHGEF and pleckstrin domain-containing protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A9J7M4E7, C3ZF05
      Conserved Domains (6) summary
      smart00295
      Location:64 → 255
      B41; Band 4.1 homologues
      cd00160
      Location:601 → 788
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cd01220
      Location:813 → 921
      PH1_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 1
      cd13193
      Location:242 → 362
      FERM_C_FARP1-like; FERM domain C-lobe of FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins
      cd13235
      Location:991 → 1088
      PH2_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2
      pfam08736
      Location:355 → 398
      FA; FERM adjacent (FA)

    2. XM_035838217.1 → XP_035694110.1  FERM, ARHGEF and pleckstrin domain-containing protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A9J7N984, C3ZF05
      Conserved Domains (6) summary
      smart00295
      Location:64 → 255
      B41; Band 4.1 homologues
      cd00160
      Location:607 → 794
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cd01220
      Location:819 → 927
      PH1_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 1
      cd13193
      Location:242 → 362
      FERM_C_FARP1-like; FERM domain C-lobe of FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins
      cd13235
      Location:997 → 1094
      PH2_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2
      pfam08736
      Location:355 → 398
      FA; FERM adjacent (FA)

    3. XM_035838218.1 → XP_035694111.1  FERM, ARHGEF and pleckstrin domain-containing protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A9J7N984, C3ZF05
      Conserved Domains (6) summary
      smart00295
      Location:64 → 255
      B41; Band 4.1 homologues
      cd00160
      Location:607 → 794
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cd01220
      Location:819 → 927
      PH1_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 1
      cd13193
      Location:242 → 362
      FERM_C_FARP1-like; FERM domain C-lobe of FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins
      cd13235
      Location:997 → 1094
      PH2_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2
      pfam08736
      Location:355 → 398
      FA; FERM adjacent (FA)

    4. XM_035838219.1 → XP_035694112.1  FERM, ARHGEF and pleckstrin domain-containing protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A9J7N984, C3ZF05
      Conserved Domains (6) summary
      smart00295
      Location:64 → 255
      B41; Band 4.1 homologues
      cd00160
      Location:607 → 794
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cd01220
      Location:819 → 927
      PH1_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 1
      cd13193
      Location:242 → 362
      FERM_C_FARP1-like; FERM domain C-lobe of FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins
      cd13235
      Location:997 → 1094
      PH2_FARP1-like; FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2
      pfam08736
      Location:355 → 398
      FA; FERM adjacent (FA)
    Nucleotide Protein Strain
    Heading Accession and Version

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