U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    ube3a ubiquitin protein ligase E3A [ Sander lucioperca (pikeperch) ]

    Gene ID: 116057015, updated on 21-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ube3a
    Gene description
    ubiquitin protein ligase E3A
    See related
    EnsemblRapid:ENSSLUG00000016003
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sander lucioperca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ube3a in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current SLUC_FBN_1.2 (GCF_008315115.2) 11 NC_050183.1 (10480807..10493794)
    100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022172872.1 (23881..36655, complement)

    Chromosome 11 - NC_050183.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type A receptor subunit beta3 Neighboring gene uncharacterized LOC116057021 Neighboring gene ATPase phospholipid transporting 10A Neighboring gene cyclic nucleotide gated channel subunit alpha 3a Neighboring gene transmembrane protein 131

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin-protein ligase E3A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLUC_FBN_1.2 Primary Assembly

    Genomic

    1. NC_050183.1 Reference SLUC_FBN_1.2 Primary Assembly

      Range
      10480807..10493794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036007727.1 → XP_035863620.1  ubiquitin-protein ligase E3A isoform X2

      UniProtKB/TrEMBL
      A0A8C9ZEE2
      Related
      ENSSLUP00000037236.2, ENSSLUT00000038388.2
      Conserved Domains (1) summary
      cd00078
      Location:377 → 727
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    2. XM_031309433.2 → XP_031165293.1  ubiquitin-protein ligase E3A isoform X1

      UniProtKB/TrEMBL
      A0A8C9ZB77
      Conserved Domains (2) summary
      cd00078
      Location:475 → 825
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam16558
      Location:6 → 60
      AZUL; Amino-terminal Zinc-binding domain of ubiquitin ligase E3A

    3. XM_036007728.1 → XP_035863621.1  ubiquitin-protein ligase E3A isoform X2

      UniProtKB/TrEMBL
      A0A8C9ZEE2
      Conserved Domains (1) summary
      cd00078
      Location:377 → 727
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    4. XM_031309434.2 → XP_031165294.1  ubiquitin-protein ligase E3A isoform X1

      UniProtKB/TrEMBL
      A0A8C9ZB77
      Related
      ENSSLUP00000037144.2, ENSSLUT00000038295.2
      Conserved Domains (2) summary
      cd00078
      Location:475 → 825
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam16558
      Location:6 → 60
      AZUL; Amino-terminal Zinc-binding domain of ubiquitin ligase E3A

    RNA

    1. XR_004106712.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.