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    prp24 RNA-binding protein Prp24 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539617, updated on 18-Sep-2024

    Summary

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    Official Symbol
    prp24
    Official Full Name
    RNA-binding protein Prp24
    Primary source
    PomBase:SPBC1861.04c
    Locus tag
    SPOM_SPBC1861.04C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See prp24 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003423.3 (4135960..4139238, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ARS-binding protein Abp2 Neighboring gene ncRNA Neighboring gene NatC N-acetyltransferase complex subunit Mak10 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene carbohydrate kinase Neighboring gene protein Mug131

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes. Montemayor EJ, et al. RNA, 2020 Oct. PMID 32518066, Free PMC Article
    2. Sde2 is an intron-specific pre-mRNA splicing regulator activated by ubiquitin-like processing. Thakran P, et al. EMBO J, 2018 Jan 4. PMID 28947618, Free PMC Article
    3. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
    4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables snRNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spliceosomal complex assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in spliceosomal tri-snRNP complex assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of U6 snRNP EXP
    Inferred from Experiment
    more info
    		 PubMed 
    is_active_in nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Prp24

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      4135960..4139238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022646.3 → NP_596721.1  RNA-binding protein Prp24 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596721.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9USY2
      Conserved Domains (5) summary
      cd12296
      Location:590 → 662
      RRM1_Prp24; RNA recognition motif 1 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
      cd12297
      Location:666 → 743
      RRM2_Prp24; RNA recognition motif 2 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
      cd12298
      Location:757 → 829
      RRM3_Prp24; RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
      cd12299
      Location:874 → 943
      RRM4_Prp24; RNA recognition motif 4 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
      pfam05391
      Location:996 → 1014
      Lsm_interact; Lsm interaction motif
    Nucleotide Protein
    Heading Accession and Version

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