U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC115213453 probable ATP-dependent RNA helicase DDX47 [ Octopus sinensis (East Asian common octopus) ]

    Gene ID: 115213453, updated on 4-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC115213453
    Gene description
    probable ATP-dependent RNA helicase DDX47
    See related
    EnsemblRapid:LOC115213453
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Octopus sinensis
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC115213453 in Genome Data Viewer
    Location:
    chromosome: LG6
    Exon count:
    14
    Annotation release Status Assembly LG Location
    101 current ASM634580v1 (GCF_006345805.1) LG6 NC_043002.1 (118401439..118424036)

    Linkage Group LG6 - NC_043002.1Genomic Context describing neighboring genes Neighboring gene fasciculation and elongation protein zeta-2 Neighboring gene rab11 family-interacting protein 4A-like Neighboring gene PHD finger-like domain-containing protein 5A Neighboring gene zinc finger protein 98-like Neighboring gene TM2 domain-containing protein CG11103

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_043002.1 Chromosome LG6 Reference ASM634580v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable ATP-dependent RNA helicase DDX47

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Octopus sinensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM634580v1 Primary Assembly

    Genomic

    1. NC_043002.1 Reference ASM634580v1 Primary Assembly

      Range
      118401439..118424036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029782432.2 → XP_029638292.2  probable ATP-dependent RNA helicase DDX47 isoform X1

      Related
      XP_029638292.2, XM_029782432.2
      Conserved Domains (2) summary
      COG0513
      Location:109 → 516
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd17954
      Location:109 → 311
      DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47

    2. XM_036504299.1 → XP_036360192.1  probable ATP-dependent RNA helicase DDX47 isoform X2

      Related
      XP_036360192.1, XM_036504299.1
      Conserved Domains (2) summary
      COG0513
      Location:72 → 479
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd17954
      Location:72 → 274
      DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases