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    KDM2B lysine demethylase 2B [ Sturnira hondurensis ]

    Gene ID: 118991072, updated on 30-Mar-2024

    Summary

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    Gene symbol
    KDM2B
    Gene description
    lysine demethylase 2B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sturnira hondurensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Sturnira
    Orthologs
    human mouse all
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    Genomic context

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    See KDM2B in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    100.20210611 current WHU_Shon_v2.1 (GCF_014824575.2) Unplaced Scaffold NW_023513819.1 (3958224..4061396)

    NW_023513819.1Genomic Context describing neighboring genes Neighboring gene ORAI calcium release-activated calcium modulator 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118991075 Neighboring gene ring finger protein 34 Neighboring gene anaphase promoting complex subunit 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023513819 Unplaced Scaffold Reference WHU_Shon_v2.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sturnira hondurensis Updated Annotation Release 100.20210611

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference WHU_Shon_v2.1

    Genomic

    1. NW_023513819.1 Reference WHU_Shon_v2.1

      Range
      3958224..4061396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037052037.1 → XP_036907932.1  lysine-specific demethylase 2B isoform X1

      Conserved Domains (10) summary
      PTZ00449
      Location:693 → 929
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:1094 → 1283
      AMN1; Antagonist of mitotic exit network protein 1
      smart00558
      Location:151 → 226
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      sd00034
      Location:1078 → 1102
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:634 → 695
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:588 → 624
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:1044 → 1082
      F-box-like
      pfam17811
      Location:303 → 338
      JHD; Jumonji helical domain
      cd21785
      Location:480 → 546
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:198 → 304
      cupin_RmlC-like; RmlC-like cupin superfamily

    2. XM_037052038.1 → XP_036907933.1  lysine-specific demethylase 2B isoform X2

      Conserved Domains (10) summary
      PTZ00449
      Location:693 → 926
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:1091 → 1280
      AMN1; Antagonist of mitotic exit network protein 1
      smart00558
      Location:151 → 226
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      sd00034
      Location:1075 → 1099
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:634 → 695
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:588 → 624
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:1041 → 1079
      F-box-like
      pfam17811
      Location:303 → 338
      JHD; Jumonji helical domain
      cd21785
      Location:480 → 546
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:198 → 304
      cupin_RmlC-like; RmlC-like cupin superfamily

    3. XM_037052039.1 → XP_036907934.1  lysine-specific demethylase 2B isoform X3

      Conserved Domains (10) summary
      PTZ00449
      Location:687 → 923
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:1088 → 1277
      AMN1; Antagonist of mitotic exit network protein 1
      smart00558
      Location:145 → 220
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      sd00034
      Location:1072 → 1096
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:628 → 689
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:582 → 618
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:1038 → 1076
      F-box-like
      pfam17811
      Location:297 → 332
      JHD; Jumonji helical domain
      cd21785
      Location:474 → 540
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:192 → 298
      cupin_RmlC-like; RmlC-like cupin superfamily

    4. XM_037052040.1 → XP_036907935.1  lysine-specific demethylase 2B isoform X4

      Conserved Domains (10) summary
      PTZ00449
      Location:687 → 920
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:1085 → 1274
      AMN1; Antagonist of mitotic exit network protein 1
      smart00558
      Location:145 → 220
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      sd00034
      Location:1069 → 1093
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:628 → 689
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:582 → 618
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:1035 → 1073
      F-box-like
      pfam17811
      Location:297 → 332
      JHD; Jumonji helical domain
      cd21785
      Location:474 → 540
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:192 → 298
      cupin_RmlC-like; RmlC-like cupin superfamily

    5. XM_037052043.1 → XP_036907938.1  lysine-specific demethylase 2B isoform X5

      Conserved Domains (9) summary
      PTZ00449
      Location:493 → 729
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:894 → 1083
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:878 → 902
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:434 → 495
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:388 → 424
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:844 → 882
      F-box-like
      pfam17811
      Location:103 → 138
      JHD; Jumonji helical domain
      cd21785
      Location:280 → 346
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:1 → 104
      cupin_RmlC-like; RmlC-like cupin superfamily

    6. XM_037052041.1 → XP_036907936.1  lysine-specific demethylase 2B isoform X5

      Conserved Domains (9) summary
      PTZ00449
      Location:493 → 729
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:894 → 1083
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:878 → 902
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:434 → 495
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:388 → 424
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:844 → 882
      F-box-like
      pfam17811
      Location:103 → 138
      JHD; Jumonji helical domain
      cd21785
      Location:280 → 346
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:1 → 104
      cupin_RmlC-like; RmlC-like cupin superfamily

    7. XM_037052042.1 → XP_036907937.1  lysine-specific demethylase 2B isoform X5

      Conserved Domains (9) summary
      PTZ00449
      Location:493 → 729
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:894 → 1083
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:878 → 902
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:434 → 495
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:388 → 424
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:844 → 882
      F-box-like
      pfam17811
      Location:103 → 138
      JHD; Jumonji helical domain
      cd21785
      Location:280 → 346
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:1 → 104
      cupin_RmlC-like; RmlC-like cupin superfamily

    8. XM_037052044.1 → XP_036907939.1  lysine-specific demethylase 2B isoform X5

      Conserved Domains (9) summary
      PTZ00449
      Location:493 → 729
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cd09293
      Location:894 → 1083
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:878 → 902
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd15644
      Location:434 → 495
      PHD_KDM2B; PHD finger found in Lysine-specific demethylase 2B (KDM2B)
      pfam02008
      Location:388 → 424
      zf-CXXC; CXXC zinc finger domain
      pfam12937
      Location:844 → 882
      F-box-like
      pfam17811
      Location:103 → 138
      JHD; Jumonji helical domain
      cd21785
      Location:280 → 346
      CTD_KDM2B; C-terminal domain found in Lysine-specific demethylase 2B
      cl40423
      Location:1 → 104
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version

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