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    LOC119407250 FYVE, RhoGEF and PH domain-containing protein 5 [ Rhipicephalus sanguineus (brown dog tick) ]

    Gene ID: 119407250, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC119407250
    Gene description
    FYVE, RhoGEF and PH domain-containing protein 5
    See related
    VectorBase:RSAN_057263; EnsemblRapid:LOC119407250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhipicephalus sanguineus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Rhipicephalus
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    Genomic context

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    See LOC119407250 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current BIME_Rsan_1.4 (GCF_013339695.2) 10 NC_051185.1 (23227532..23278508)
    100 previous assembly ASM1333969v1 (GCF_013339695.1) 10 NC_051185.1 (23227532..23278510)

    Chromosome 10 - NC_051185.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119407249 Neighboring gene myotubularin-related protein 14 Neighboring gene ubiquitin conjugating enzyme E2H Neighboring gene uncharacterized LOC119407252

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FYVE, RhoGEF and PH domain-containing protein 5; mucin-17; uncharacterized protein LOC119407250

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhipicephalus sanguineus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BIME_Rsan_1.4

    Genomic

    1. NC_051185.1 Reference BIME_Rsan_1.4

      Range
      23227532..23278508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037674128.2 → XP_037530056.1  mucin-17 isoform X3

      UniProtKB/TrEMBL
      A0A9D4QCG5
      Related
      XP_037530056.1, XM_037674128.2
      Conserved Domains (6) summary
      PRK10811
      Location:432 → 586
      rne; ribonuclease E; Reviewed
      cd13389
      Location:1336 → 1447
      PH1_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal Pleckstrin Homology (PH) domain
      cl28890
      Location:1468 → 1529
      FYVE_like_SF; FYVE domain like superfamily
      pfam00621
      Location:1130 → 1313
      RhoGEF; RhoGEF domain
      NF033845
      Location:789 → 1024
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
      cl17171
      Location:1574 → 1663
      PH-like; Pleckstrin homology-like domain

    2. XM_049419925.1 → XP_049275882.1  uncharacterized protein LOC119407250 isoform X2

      Related
      XP_049275882.1, XM_049419925.1

    3. XM_037674126.2 → XP_037530054.1  mucin-17 isoform X1

      UniProtKB/TrEMBL
      A0A9D4QCG5
      Related
      XP_037530054.1, XM_037674126.2
      Conserved Domains (6) summary
      PRK10811
      Location:472 → 626
      rne; ribonuclease E; Reviewed
      cd13389
      Location:1376 → 1487
      PH1_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal Pleckstrin Homology (PH) domain
      pfam00621
      Location:1170 → 1353
      RhoGEF; RhoGEF domain
      pfam01363
      Location:1508 → 1573
      FYVE; FYVE zinc finger
      NF033845
      Location:831 → 1064
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
      cl17171
      Location:1614 → 1703
      PH-like; Pleckstrin homology-like domain

    4. XM_037674129.2 → XP_037530057.1  FYVE, RhoGEF and PH domain-containing protein 5 isoform X4

      UniProtKB/TrEMBL
      A0A9D4QCG5
      Related
      XP_037530057.1, XM_037674129.2
      Conserved Domains (6) summary
      PRK10811
      Location:348 → 502
      rne; ribonuclease E; Reviewed
      cd13389
      Location:1252 → 1363
      PH1_FGD5_FGD6; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6, N-terminal Pleckstrin Homology (PH) domain
      cl28890
      Location:1384 → 1445
      FYVE_like_SF; FYVE domain like superfamily
      pfam00621
      Location:1046 → 1229
      RhoGEF; RhoGEF domain
      NF033845
      Location:705 → 940
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
      cl17171
      Location:1490 → 1579
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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