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    LOC119555333 autophagy protein 12-like [ Drosophila subpulchrella ]

    Gene ID: 119555333, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC119555333
    Gene description
    autophagy protein 12-like
    See related
    EnsemblRapid:LOC119555333
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila subpulchrella
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC119555333 in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current RU_Dsub_v1.1 (GCF_014743375.2) 3L NC_050612.1 (23419306..23419937)

    Chromosome 3L - NC_050612.1Genomic Context describing neighboring genes Neighboring gene Larval serum protein 2 Neighboring gene protein KRI1 homolog Neighboring gene differentially expressed in FDCP 8 homolog Neighboring gene NADH dehydrogenase (ubiquinone) SGDH subunit Neighboring gene Rho GTPase activating protein at 68F Neighboring gene eukaryotic translation initiation factor 3 subunit L

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_050612.1 Chromosome 3L Reference RU_Dsub_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in C-terminal protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg12-Atg5-Atg16 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy protein 12-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila subpulchrella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RU_Dsub_v1.1

    Genomic

    1. NC_050612.1 Reference RU_Dsub_v1.1

      Range
      23419306..23419937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037866667.1 → XP_037722595.1  autophagy protein 12-like

      Related
      XP_037722595.1, XM_037866667.1
      Conserved Domains (1) summary
      pfam04110
      Location:25 → 111
      APG12; Ubiquitin-like autophagy protein Apg12
    Nucleotide Protein Strain
    Heading Accession and Version

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