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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001282588.2 → NP_001269517.1 SLAM family member 7 isoform b precursor
See identical proteins and their annotated locations for NP_001269517.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks three alternate exons, which results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a.
- Source sequence(s)
-
AK298548, AL121985, BQ000581, DC388332
- Consensus CDS
-
CCDS60323.1
- UniProtKB/Swiss-Prot
-
Q9NQ25
- Related
- ENSP00000416592.2, ENST00000444090.6
- Conserved Domains (2) summary
-
- cd05775
Location:31 → 125
- Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
- smart00410
Location:27 → 104
- IG_like; Immunoglobulin like
-
NM_001282589.2 → NP_001269518.1 SLAM family member 7 isoform c precursor
See identical proteins and their annotated locations for NP_001269518.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks two alternate in-frame exons in the central coding region, compared to variant 1, resulting in an isoform (c) that is shorter than isoform a.
- Source sequence(s)
-
AK298499, AL121985, BQ000581, DC388332
- Consensus CDS
-
CCDS60322.1
- UniProtKB/Swiss-Prot
-
Q9NQ25
- Related
- ENSP00000405605.2, ENST00000441662.6
- Conserved Domains (2) summary
-
- cd05775
Location:31 → 125
- Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
- smart00410
Location:27 → 104
- IG_like; Immunoglobulin like
-
NM_001282590.2 → NP_001269519.1 SLAM family member 7 isoform d precursor
See identical proteins and their annotated locations for NP_001269519.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (d) that is shorter than isoform a.
- Source sequence(s)
-
AL121985, AL834424, BQ000581, DC388332
- Consensus CDS
-
CCDS60324.1
- UniProtKB/TrEMBL
-
A8K7T2
- Related
- ENSP00000357021.3, ENST00000368042.7
-
NM_001282591.2 → NP_001269520.1 SLAM family member 7 isoform e precursor
See identical proteins and their annotated locations for NP_001269520.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks an alternate in-frame exon in both the 5' and central coding regions, compared to variant 1, resulting in an isoform (e) that is shorter than isoform a.
- Source sequence(s)
-
AK301438, AL121985, BQ000581, DC388332
- Consensus CDS
-
CCDS60325.1
- UniProtKB/TrEMBL
-
A8K7T2
- Related
- ENSP00000409965.2, ENST00000458602.6
-
NM_001282592.2 → NP_001269521.1 SLAM family member 7 isoform f precursor
See identical proteins and their annotated locations for NP_001269521.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks an alternate exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (f, also known as CS1-S) has a distinct C-terminus and is shorter than isoform a.
- Source sequence(s)
-
AK290706, AL121985, BQ000581, DC388332
- Consensus CDS
-
CCDS60321.1
- UniProtKB/Swiss-Prot
-
Q9NQ25
- Related
- ENSP00000352281.4, ENST00000359331.8
- Conserved Domains (1) summary
-
- cl11960
Location:31 → 125
- Ig; Immunoglobulin domain
-
NM_001282593.2 → NP_001269522.1 SLAM family member 7 isoform g precursor
See identical proteins and their annotated locations for NP_001269522.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) lacks an alternate in-frame exon in the 5' coding region, and also lacks two alternate exons that result in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (g) has a distinct C-terminus and is shorter than isoform a.
- Source sequence(s)
-
AK301137, AL121985, BQ000581, DC388332
- Consensus CDS
-
CCDS72956.1
- UniProtKB/TrEMBL
-
B4DVL7
- Related
- ENSP00000403294.2, ENST00000458104.6
-
NM_001282594.2 → NP_001269523.1 SLAM family member 7 isoform h precursor
See identical proteins and their annotated locations for NP_001269523.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) lacks an alternate in-frame exon in the 5' coding region, and uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (h) is shorter than isoform a.
- Source sequence(s)
-
AK301432, AL121985, BQ000581, DC388332
- Consensus CDS
-
CCDS72957.1
- UniProtKB/TrEMBL
- A8K7T2, B4DW98
- Related
- ENSP00000483774.1, ENST00000621377.4
-
NM_001282595.1 → NP_001269524.1 SLAM family member 7 isoform i
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) lacks a portion of the 5' UTR and 5' coding region, and uses a downstream in-frame translational start codon, compared to variant 1. The encoded isoform (i) is shorter at the N-terminus, compared to isoform a.
- Source sequence(s)
-
AB027233, AL121985, BQ000581, DA978435, DA978525
- UniProtKB/TrEMBL
-
A8K7T2
-
NM_001282596.2 → NP_001269525.1 SLAM family member 7 isoform j precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (10) lacks an alternate in-frame exon in the 5' coding region, and also lacks an alternate exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (j) has a distinct C-terminus and is shorter than isoform a.
- Source sequence(s)
-
AL121985, BQ000581, DA644251, DC388332
-
NM_021181.5 → NP_067004.3 SLAM family member 7 isoform a precursor
See identical proteins and their annotated locations for NP_067004.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a, also known as CS1-L).
- Source sequence(s)
-
AB027233, AL121985, BQ000581, DC388332
- Consensus CDS
-
CCDS1209.1
- UniProtKB/Swiss-Prot
- A8K3U1, B4DPU4, B4DPY3, B4DWA3, Q8N6Y8, Q8ND32, Q9NQ25, Q9NY08, Q9NY23
- UniProtKB/TrEMBL
-
A8K7Y3
- Related
- ENSP00000357022.3, ENST00000368043.8
- Conserved Domains (2) summary
-
- cd05775
Location:31 → 125
- Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
- smart00410
Location:27 → 104
- IG_like; Immunoglobulin like
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
160739057..160754821
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011509828.1 → XP_011508130.1 SLAM family member 7 isoform X1
- UniProtKB/TrEMBL
-
A8K7Y3
- Conserved Domains (2) summary
-
- cd05775
Location:31 → 125
- Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
- smart00410
Location:27 → 104
- IG_like; Immunoglobulin like
-
XM_011509829.1 → XP_011508131.1 SLAM family member 7 isoform X2
- Conserved Domains (2) summary
-
- cd05775
Location:31 → 125
- Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
- smart00410
Location:27 → 104
- IG_like; Immunoglobulin like
-
XM_047426359.1 → XP_047282315.1 SLAM family member 7 isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
159876146..159891896
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054337936.1 → XP_054193911.1 SLAM family member 7 isoform X1
-
XM_054337937.1 → XP_054193912.1 SLAM family member 7 isoform X2
-
XM_054337938.1 → XP_054193913.1 SLAM family member 7 isoform X3