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    chd8 chromodomain helicase DNA binding protein 8 [ Cyprinodon tularosa ]

    Gene ID: 119793297, updated on 21-Mar-2024

    Summary

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    Gene symbol
    chd8
    Gene description
    chromodomain helicase DNA binding protein 8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinodon tularosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
    Orthologs
    human zebrafish all
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    Genomic context

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    See chd8 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    100 current ASM1607723v1 (GCF_016077235.1) Unplaced Scaffold NW_024039174.1 (558158..589983, complement)

    NW_024039174.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119793369 Neighboring gene E3 ubiquitin-protein ligase RNF135-like Neighboring gene TOX high mobility group box family member 4 a Neighboring gene cerebellin 12 Neighboring gene tripartite motif containing 110

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024039174 Unplaced Scaffold Reference ASM1607723v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinodon tularosa Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1607723v1

    Genomic

    1. NW_024039174.1 Reference ASM1607723v1

      Range
      558158..589983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038300397.1 → XP_038156325.1  chromodomain-helicase-DNA-binding protein 8 isoform X2

      Conserved Domains (5) summary
      PLN03142
      Location:942 → 1543
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:853 → 910
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:770 → 835
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2434 → 2476
      BRK; BRK domain
      cl41773
      Location:66 → 474
      SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

    2. XM_038300396.1 → XP_038156324.1  chromodomain-helicase-DNA-binding protein 8 isoform X1

      Conserved Domains (5) summary
      PLN03142
      Location:943 → 1544
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:854 → 911
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:771 → 836
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2435 → 2477
      BRK; BRK domain
      cl41773
      Location:66 → 474
      SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
    Nucleotide Protein
    Heading Accession and Version

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