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    LOC6561054 focadhesin [ Drosophila grimshawi ]

    Gene ID: 6561054, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6561054
    Gene description
    focadhesin
    Locus tag
    Dgri_GH20660
    See related
    EnsemblRapid:LOC6561054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila grimshawi
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
    Also known as
    GH20660; GH20660-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6561054 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (8678175..8684121, complement)
    102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961673.1 (4666284..4672230, complement)

    NW_025062889.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116804981 Neighboring gene Myotubularin related protein 6 Neighboring gene uncharacterized LOC6561298 Neighboring gene uncharacterized LOC6560735 Neighboring gene uncharacterized LOC6561223

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    focadhesin
    Names
    Dgri\GH20660
    Dgri\GH20660-PA
    dgri_GLEANR_4892

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815329v1

    Genomic

    1. NW_025062889.1 Reference ASM1815329v1

      Range
      8678175..8684121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001986159.2 → XP_001986195.1  focadhesin

      See identical proteins and their annotated locations for XP_001986195.1

      UniProtKB/TrEMBL
      B4J7D8
      Related
      XP_001986195.1, XM_001986159.2
      Conserved Domains (1) summary
      pfam12530
      Location:479 → 698
      DUF3730; Protein of unknown function (DUF3730)
    Nucleotide Protein
    Heading Accession and Version

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