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    LOC119965051 clathrin interactor 1-like [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119965051, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC119965051
    Gene description
    clathrin interactor 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
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    Genomic context

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    See LOC119965051 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 4 NC_052149.1 (143172550..143409532)

    Chromosome 4 - NC_052149.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119964158 Neighboring gene EBF transcription factor 1a Neighboring gene 40S ribosomal protein S8-like Neighboring gene 5S ribosomal RNA Neighboring gene LSM11, U7 small nuclear RNA associated Neighboring gene tRNA-histidine guanylyltransferase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052149.1 Chromosome 4 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: clathrin interactor 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052149.1 Reference sScyCan1.1 Primary Assembly

      Range
      143172550..143409532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038795287.1 → XP_038651215.1  LOW QUALITY PROTEIN: clathrin interactor 1-like

      Conserved Domains (1) summary
      cd16989
      Location:24 → 149
      ENTH_EpsinR; Epsin N-Terminal Homology (ENTH) domain of Epsin-related protein
    Nucleotide Protein
    Heading Accession and Version

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