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    LOC120023830 C-C chemokine receptor type 6-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120023830, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120023830
    Gene description
    C-C chemokine receptor type 6-like
    See related
    EnsemblRapid:ENSSNMG00000015515
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120023830 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 28 NC_052334.1 (33120589..33121978, complement)

    Chromosome 28 - NC_052334.1Genomic Context describing neighboring genes Neighboring gene myelin transcription factor 1-like protein Neighboring gene peroxidasin-like Neighboring gene uncharacterized LOC120023793 Neighboring gene uncharacterized LOC120023795 Neighboring gene reticulon 4 interacting protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052334.1 Chromosome 28 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemokine receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-C chemokine receptor type 6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052334.1 Reference SaNama_1.0 Primary Assembly

      Range
      33120589..33121978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038967947.1 → XP_038823875.1  C-C chemokine receptor type 6-like

      UniProtKB/TrEMBL
      A0A8U0PF84
      Related
      ENSSNMP00000019746.1, ENSSNMT00000023215.1
      Conserved Domains (2) summary
      cd14964
      Location:50 → 72
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:50 → 328
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    Nucleotide Protein
    Heading Accession and Version

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