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    LOC120190314 plastocyanin [ Hibiscus syriacus ]

    Gene ID: 120190314, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120190314
    Gene description
    plastocyanin
    Locus tag
    F3Y22_tig00116962pilonHSYRG01165
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120190314 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063488.1 (7494563..7495268)

    NW_024063488.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY46-like Neighboring gene uncharacterized LOC120189935 Neighboring gene hippocampus abundant transcript-like protein 1 Neighboring gene thioredoxin-like protein CDSP32, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024063488 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid lumen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastocyanin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063488.1 Reference ASM638163v2 Primary Assembly

      Range
      7494563..7495268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039193405.1 → XP_039049336.1  plastocyanin

      UniProtKB/TrEMBL
      A0A6A2WJR2
      Conserved Domains (1) summary
      pfam00127
      Location:70 → 167
      Copper-bind; Copper binding proteins, plastocyanin/azurin family
    Nucleotide Protein
    Heading Accession and Version

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