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    smyd1b SET and MYND domain containing 1b [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100196656, updated on 20-Apr-2024

    Summary

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    Gene symbol
    smyd1b
    Gene description
    SET and MYND domain containing 1b
    See related
    Ensembl:ENSSSAG00000074939
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Orthologs
    zebrafish all
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    Genomic context

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    See smyd1b in Genome Data Viewer
    Location:
    chromosome: ssa20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa20 NC_059461.1 (39435667..39445626, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (38016719..38026637, complement)

    Chromosome ssa20 - NC_059461.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 366-like Neighboring gene isotocin-neurophysin IT 2-like Neighboring gene leucine zipper putative tumor suppressor 3-like Neighboring gene serine/threonine-protein kinase NIM1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
    2. Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon. Warren IA, et al. Genome Biol Evol, 2014 Jun 19. PMID 24951567, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase SMYD1b
    NP_001135157.1
    XP_014017228.1
    XP_045558881.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001141685.1 → NP_001135157.1  histone-lysine N-methyltransferase SMYD1b

      See identical proteins and their annotated locations for NP_001135157.1

      Status: PROVISIONAL

      Source sequence(s)
      BT043596
      UniProtKB/TrEMBL
      B5DG37
      Related
      ENSSSAP00000101831.1, ENSSSAT00000136362.2
      Conserved Domains (3) summary
      pfam00856
      Location:205 → 241
      SET; SET domain
      pfam01753
      Location:47 → 85
      zf-MYND; MYND finger
      cl02566
      Location:3 → 29
      SET; SET domain

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059461.1 Reference Ssal_v3.1

      Range
      39435667..39445626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045702925.1 → XP_045558881.1  histone-lysine N-methyltransferase SMYD1b isoform X2

      UniProtKB/TrEMBL
      A0A1S3NPC6
      Related
      ENSSSAP00000101824.1, ENSSSAT00000136354.2
      Conserved Domains (2) summary
      cd10526
      Location:3 → 269
      SET_SMYD1; SET domain (including post-SET domain) found in SET and MYND domain-containing protein 1 (SMYD1) and similar proteins
      pfam01753
      Location:47 → 85
      zf-MYND; MYND finger

    2. XM_014161753.2 → XP_014017228.1  histone-lysine N-methyltransferase SMYD1b isoform X1

      UniProtKB/TrEMBL
      A0A1S3NP61
      Related
      ENSSSAP00000101807.2, ENSSSAT00000136337.2
      Conserved Domains (3) summary
      pfam00856
      Location:205 → 254
      SET; SET domain
      pfam01753
      Location:47 → 85
      zf-MYND; MYND finger
      cl02566
      Location:3 → 29
      SET; SET domain
    Nucleotide Protein
    Heading Accession and Version

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