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    LOC120540050 voltage-dependent P/Q-type calcium channel subunit alpha-1A-like [ Polypterus senegalus (gray bichir) ]

    Gene ID: 120540050, updated on 8-May-2024

    Summary

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    Gene symbol
    LOC120540050
    Gene description
    voltage-dependent P/Q-type calcium channel subunit alpha-1A-like
    Locus tag
    GTO96_0006562
    See related
    EnsemblRapid:ENSSTSG00000025138
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Polypterus senegalus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
    Also known as
    Cacna1a_0; Cacna1a_1
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    Genomic context

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    See LOC120540050 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    100 current ASM1683550v1 (GCF_016835505.1) 12 NC_053165.1 (159517875..160032449)

    Chromosome 12 - NC_053165.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120540045 Neighboring gene THAP domain-containing protein 6-like Neighboring gene uncharacterized LOC120540049 Neighboring gene immediate early response gene 2 protein-like Neighboring gene mannosidase, alpha, class 2B, member 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053165.1 Chromosome 12 Reference ASM1683550v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables high voltage-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of voltage-gated calcium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    voltage-dependent P/Q-type calcium channel subunit alpha-1A-like
    Names
    CAC1A protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1683550v1 Primary Assembly

    Genomic

    1. NC_053165.1 Reference ASM1683550v1 Primary Assembly

      Range
      159517875..160032449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039770511.1 → XP_039626445.1  voltage-dependent P/Q-type calcium channel subunit alpha-1A-like

      Related
      ENSSTSP00000058406.1, ENSSTST00000066798.1
      Conserved Domains (2) summary
      smart01062
      Location:2003 → 2033
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      PHA03307
      Location:2325 → 2533
      PHA03307; transcriptional regulator ICP4; Provisional
    Nucleotide Protein
    Heading Accession and Version

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