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    LOC120341966 clathrin heavy chain 1 [ Styela clava ]

    Gene ID: 120341966, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120341966
    Gene description
    clathrin heavy chain 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Styela clava
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Styelidae; Styela
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    Genomic context

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    See LOC120341966 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    100 current ASM1312258v2 (GCF_013122585.1) Unplaced Scaffold NW_024102838.1 (22419107..22440456, complement)

    NW_024102838.1Genomic Context describing neighboring genes Neighboring gene zinc finger CW-type PWWP domain protein 1-like Neighboring gene perilipin-2-like Neighboring gene vacuolar protein sorting-associated protein 11 homolog Neighboring gene protein PRRC1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024102838 Unplaced Scaffold Reference ASM1312258v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin coat of coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin coat of trans-Golgi network vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in clathrin-coated endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clathrin heavy chain 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Styela clava Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1312258v2 Primary Assembly

    Genomic

    1. NW_024102838.1 Reference ASM1312258v2 Primary Assembly

      Range
      22419107..22440456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039410586.1 → XP_039266520.1  clathrin heavy chain 1

      Conserved Domains (6) summary
      smart00299
      Location:1274 → 1416
      CLH; Clathrin heavy chain repeat homology
      pfam09606
      Location:1636 → 1690
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00637
      Location:979 → 1119
      Clathrin; Region in Clathrin and VPS
      pfam01394
      Location:256 → 288
      Clathrin_propel; Clathrin propeller repeat
      pfam09268
      Location:331 → 354
      Clathrin-link; Clathrin, heavy-chain linker
      pfam13838
      Location:356 → 421
      Clathrin_H_link; Clathrin-H-link
    Nucleotide Protein
    Heading Accession and Version

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