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    LOC120515622 protein Jumonji-like [ Polypterus senegalus (gray bichir) ]

    Gene ID: 120515622, updated on 8-May-2024

    Summary

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    Gene symbol
    LOC120515622
    Gene description
    protein Jumonji-like
    See related
    EnsemblRapid:ENSSTSG00000018430
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Polypterus senegalus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
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    Genomic context

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    See LOC120515622 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current ASM1683550v1 (GCF_016835505.1) 15 NC_053168.1 (137766118..138035395)

    Chromosome 15 - NC_053168.1Genomic Context describing neighboring genes Neighboring gene glyoxylate/hydroxypyruvate reductase B-like Neighboring gene uncharacterized LOC120515682 Neighboring gene dysbindin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053168.1 Chromosome 15 Reference ASM1683550v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jumonji-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1683550v1 Primary Assembly

    Genomic

    1. NC_053168.1 Reference ASM1683550v1 Primary Assembly

      Range
      137766118..138035395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039736756.1 → XP_039592690.1  protein Jumonji-like isoform X2

      Related
      ENSSTSP00000042598.1, ENSSTST00000047891.1
      Conserved Domains (3) summary
      smart00545
      Location:562 → 603
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00558
      Location:889 → 947
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd16870
      Location:626 → 737
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins

    2. XM_039736757.1 → XP_039592691.1  protein Jumonji-like isoform X3

      Conserved Domains (2) summary
      smart00558
      Location:613 → 671
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd16870
      Location:379 → 461
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins

    3. XM_039736754.1 → XP_039592688.1  protein Jumonji-like isoform X1

      Conserved Domains (3) summary
      smart00545
      Location:385 → 426
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00558
      Location:712 → 770
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd16870
      Location:449 → 560
      ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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